Variant report

Variant	rs2237932
Chromosome Location	chr11:17882798-17882799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1015545	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1029499	0.81[JPT][hapmap]
rs2237929	0.90[CHB][hapmap]
rs2237931	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237933	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2237934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237939	0.81[JPT][hapmap]
rs2237941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:17838400-17971600	Weak transcription	Gastric	stomach
3	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:17858800-17893200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:17862200-17889000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:17862200-17895400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:17863800-17886200	Weak transcription	Fetal Intestine Large	intestine
8	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:17864400-17894600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:17864400-17944800	Weak transcription	Ovary	ovary
11	chr11:17864800-17899400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:17865000-17884400	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:17866000-17894600	Weak transcription	Adipose Nuclei	Adipose
14	chr11:17866200-17894600	Weak transcription	Liver	Liver
15	chr11:17866600-17888800	Weak transcription	Dnd41	blood
16	chr11:17866600-17895400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:17867800-17890200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:17868400-17895200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:17868600-17894800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:17868600-17914000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:17868800-17887600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:17868800-17894600	Weak transcription	Brain Anterior Caudate	brain
23	chr11:17868800-17894800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:17868800-17895200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:17869000-17895400	Weak transcription	Lung	lung
26	chr11:17869000-17909600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:17869000-17916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:17869400-17887600	Weak transcription	Fetal Thymus	thymus
29	chr11:17872600-17926600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:17873000-17895200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:17873800-17884000	Weak transcription	Left Ventricle	heart
32	chr11:17874000-17887400	Weak transcription	Right Ventricle	heart
33	chr11:17876400-17900200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:17876600-17895200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:17876800-17914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:17877800-17896400	Weak transcription	HSMM	muscle
37	chr11:17878000-17883000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:17878000-17895400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:17878200-17883200	Weak transcription	Thymus	Thymus
40	chr11:17878200-17898600	Weak transcription	GM12878-XiMat	blood
41	chr11:17879000-17894800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:17879400-17887800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:17879800-17883400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:17879800-17884000	Weak transcription	HepG2	liver
45	chr11:17880200-17882800	Weak transcription	Primary T cells from cord blood	blood
46	chr11:17880600-17882800	Weak transcription	Primary B cells from cord blood	blood
47	chr11:17880600-17887400	Weak transcription	Fetal Stomach	stomach
48	chr11:17880600-17889800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:17880800-17884000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:17881800-17887400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links