Variant report

Variant	rs2239853
Chromosome Location	chr1:169525766-169525767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10753787	0.87[ASN][1000 genomes]
rs10800457	0.90[ASN][1000 genomes]
rs1894697	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894698	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894699	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187955	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3753305	0.90[ASN][1000 genomes]
rs4656188	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427202	0.93[ASN][1000 genomes]
rs6670678	0.90[ASN][1000 genomes]
rs6678795	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6685578	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540556	0.93[ASN][1000 genomes]
rs7548857	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760694	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
2	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
4	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:169516000-169531400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:169517200-169530400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr1:169518000-169531000	Strong transcription	HepG2	liver
9	chr1:169518400-169531000	Strong transcription	Liver	Liver
10	chr1:169523000-169530200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:169523000-169530800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:169524600-169525800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:169524600-169526200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:169524600-169541800	Weak transcription	Placenta	Placenta
15	chr1:169525400-169527000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:169525400-169528000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links