Variant report

Variant	rs2245616
Chromosome Location	chr15:57599564-57599565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57599033..57602011-chr15:57602301..57604910,2	MCF-7	breast:
2	chr15:57598101..57599763-chr15:57616490..57618411,2	K562	blood:
3	chr15:57597621..57600563-chr15:57604167..57606534,3	K562	blood:
4	chr15:56787707..56790107-chr15:57597582..57600140,2	MCF-7	breast:
5	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
6	chr15:57597689..57601400-chr15:57611239..57614125,3	K562	blood:
7	chr15:57598904..57601336-chr15:57602570..57606633,5	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF12-1	chr15:57595100-57599967	XLOC_011264

No data

Variant related genes	Relation type
ENSG00000260172	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2252366	1.00[YRI][hapmap]
rs2544128	1.00[YRI][hapmap]
rs2591073	1.00[YRI][hapmap]
rs2593245	1.00[YRI][hapmap]
rs2593253	1.00[YRI][hapmap]
rs2615234	1.00[YRI][hapmap]
rs2615239	1.00[YRI][hapmap]
rs2703617	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57598000-57599600	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr15:57598000-57599600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:57598200-57599600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:57598200-57599600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr15:57598200-57599600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:57598200-57599600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:57598200-57599600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:57598200-57599600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr15:57598200-57599600	Flanking Active TSS	Colonic Mucosa	Colon
10	chr15:57598200-57599600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr15:57598200-57599600	Enhancers	Spleen	Spleen
12	chr15:57598200-57599600	Flanking Active TSS	GM12878-XiMat	blood
13	chr15:57598200-57599800	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:57598200-57600000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:57598400-57599600	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr15:57598400-57599600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:57598400-57599600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:57598400-57599600	Enhancers	Fetal Brain Male	brain
19	chr15:57598600-57599600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr15:57598600-57600800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr15:57598800-57599600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:57598800-57599600	Active TSS	HSMM	muscle
23	chr15:57599000-57599600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:57599000-57599600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr15:57599000-57599800	Weak transcription	Fetal Kidney	kidney
26	chr15:57599000-57600400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:57599000-57600600	Enhancers	Fetal Lung	lung
28	chr15:57599000-57600800	Enhancers	HepG2	liver
29	chr15:57599000-57603000	Weak transcription	K562	blood
30	chr15:57599200-57599600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
31	chr15:57599200-57599600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr15:57599200-57599600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:57599200-57599600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:57599200-57599600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr15:57599200-57599600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr15:57599200-57599600	Enhancers	Primary B cells from cord blood	blood
37	chr15:57599200-57599600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:57599200-57599600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:57599200-57599600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:57599200-57599600	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr15:57599200-57599600	Enhancers	Placenta	Placenta
42	chr15:57599200-57599600	Enhancers	Pancreas	Pancrea
43	chr15:57599200-57599600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
44	chr15:57599200-57599600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr15:57599200-57599600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr15:57599200-57599600	Enhancers	Small Intestine	intestine
47	chr15:57599200-57599600	Flanking Active TSS	Osteobl	bone
48	chr15:57599400-57599600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:57599400-57599600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:57599400-57599600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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