Variant report

Variant	rs2248671
Chromosome Location	chr1:69696391-69696392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2243406	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2243482	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2243513	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2245205	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2245305	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2245318	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2245330	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2246059	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2246060	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2246084	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2246312	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2246316	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2246327	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2248308	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2248437	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2248775	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2249355	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2249379	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2249479	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2612233	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2612234	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2612235	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2612236	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2612238	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2612239	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2791209	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2791210	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2815431	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2815434	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3753694	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4265389	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830115	chr1:69593494-69736995	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1299	chr1:69687227-69732225	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1840142	chr1:69692232-69728843	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69694000-69697200	Weak transcription	Adipose Nuclei	Adipose
2	chr1:69695600-69696600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:69696000-69697000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:69696000-69697200	Enhancers	Liver	Liver
5	chr1:69696200-69696600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:69696200-69696800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:69696200-69696800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:69696200-69696800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:69696200-69696800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:69696200-69697200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:69696200-69697200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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