Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11088581	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12053753	0.87[ASN][1000 genomes]
rs1389072	0.87[AMR][1000 genomes]
rs1389073	0.87[AMR][1000 genomes]
rs1492960	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs183564	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2131404	0.95[AMR][1000 genomes]
rs238946	0.86[AMR][1000 genomes]
rs2823692	0.84[AMR][1000 genomes]
rs2823695	0.94[AMR][1000 genomes]
rs2823696	0.87[AMR][1000 genomes]
rs2823697	0.94[AMR][1000 genomes]
rs2823702	0.94[AMR][1000 genomes]
rs2823703	0.87[AMR][1000 genomes]
rs2823704	0.94[AMR][1000 genomes]
rs2823715	0.87[AMR][1000 genomes]
rs2823725	0.95[AMR][1000 genomes]
rs2823729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2823730	0.93[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2823732	0.87[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs73368990	0.91[ASN][1000 genomes]
rs9637001	0.91[ASN][1000 genomes]
rs9808741	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17626800-17636200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:17626800-17636600	Weak transcription	Ovary	ovary
3	chr21:17631600-17638400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr21:17633400-17634800	Enhancers	Hela-S3	cervix

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