Variant report

Variant	rs2251866
Chromosome Location	chr2:191165667-191165668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191164735..191167364-chr2:191183015..191185017,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198130	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1866848	1.00[AFR][1000 genomes]
rs2664265	0.81[AFR][1000 genomes]
rs291401	1.00[AFR][1000 genomes]
rs291457	0.91[AFR][1000 genomes]
rs698605	0.81[AFR][1000 genomes]
rs785050	0.81[AFR][1000 genomes]
rs785051	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875621	chr2:191117120-191177131	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
2	chr2:191105000-191180000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:191108200-191180000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:191115600-191182000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:191116600-191183200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:191117400-191183600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:191121000-191181400	Weak transcription	Brain Angular Gyrus	brain
8	chr2:191123200-191177600	Weak transcription	Colonic Mucosa	Colon
9	chr2:191132600-191180200	Weak transcription	NH-A	brain
10	chr2:191135600-191183200	Weak transcription	Fetal Brain Male	brain
11	chr2:191137400-191183200	Weak transcription	A549	lung
12	chr2:191141800-191183000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:191142400-191173200	Weak transcription	NHLF	lung
14	chr2:191142600-191180200	Weak transcription	Hela-S3	cervix
15	chr2:191142600-191181200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:191143000-191167000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:191143000-191183000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:191145200-191166200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:191145600-191183200	Weak transcription	HUVEC	blood vessel
20	chr2:191145800-191166000	Weak transcription	Right Ventricle	heart
21	chr2:191145800-191183000	Weak transcription	HMEC	breast
22	chr2:191146000-191171000	Weak transcription	Psoas Muscle	Psoas
23	chr2:191146000-191181200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:191146000-191181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:191146200-191165800	Weak transcription	Brain Substantia Nigra	brain
26	chr2:191146400-191172600	Weak transcription	HSMMtube	muscle
27	chr2:191146600-191166800	Weak transcription	Colon Smooth Muscle	Colon
28	chr2:191149000-191173400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:191149200-191176600	Weak transcription	NHEK	skin
30	chr2:191149200-191183200	Weak transcription	Fetal Kidney	kidney
31	chr2:191150800-191173200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:191150800-191173800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:191151000-191170800	Weak transcription	Lung	lung
34	chr2:191151000-191182800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:191151000-191183000	Weak transcription	Esophagus	oesophagus
36	chr2:191151200-191166800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:191151200-191171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:191151400-191179200	Weak transcription	Pancreas	Pancrea
39	chr2:191151400-191179800	Weak transcription	Fetal Heart	heart
40	chr2:191151400-191180800	Weak transcription	Aorta	Aorta
41	chr2:191151400-191183000	Weak transcription	Gastric	stomach
42	chr2:191151400-191183000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:191151400-191183600	Weak transcription	Thymus	Thymus
44	chr2:191151600-191165800	Weak transcription	K562	blood
45	chr2:191151600-191174800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr2:191152200-191171000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:191152800-191178000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:191152800-191180000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr2:191153400-191182800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:191153800-191166800	Weak transcription	Left Ventricle	heart

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