Variant report

Variant	rs2254705
Chromosome Location	chr12:116831388-116831389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:116825784..116832758-chr12:116857439..116867276,23	MCF-7	breast:
2	chr12:116709711..116721513-chr12:116822251..116832160,67	MCF-7	breast:
3	chr12:116826897..116832091-chr12:116928924..116934069,7	MCF-7	breast:
4	chr12:116830917..116832418-chr12:116843238..116846020,2	MCF-7	breast:
5	chr12:116828717..116832801-chr12:116838691..116842594,4	MCF-7	breast:
6	chr12:116829074..116831886-chr12:116942916..116944906,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123066	Chromatin interaction
ENSG00000264037	Chromatin interaction

rs_ID	r²[population]
rs1241073	0.87[AFR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116829200-116832400	Enhancers	Fetal Thymus	thymus
2	chr12:116829800-116832000	Weak transcription	Gastric	stomach
3	chr12:116830000-116831600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:116830000-116832200	Enhancers	A549	lung
5	chr12:116830200-116835000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:116830200-116843800	Weak transcription	NHLF	lung
7	chr12:116830400-116833000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:116830400-116834800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:116830400-116834800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:116830400-116836000	Weak transcription	NHDF-Ad	bronchial
11	chr12:116830800-116831600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr12:116830800-116831600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:116830800-116831800	Enhancers	Primary hematopoietic stem cells	blood
14	chr12:116830800-116832200	Enhancers	Thymus	Thymus
15	chr12:116830800-116832400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr12:116830800-116833600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr12:116831000-116831600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:116831000-116832000	Enhancers	Primary T cells from cord blood	blood
19	chr12:116831000-116832000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:116831000-116832400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:116831000-116832400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr12:116831200-116831400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:116831200-116832000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr12:116831200-116832000	Enhancers	Dnd41	blood
25	chr12:116831200-116832200	Enhancers	Primary T cells fromperipheralblood	blood

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