Variant report

Variant	rs2255306
Chromosome Location	chr6:101987410-101987411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10485270	0.80[JPT][hapmap]
rs2022055	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2022056	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2245820	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2245825	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2245949	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2245953	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2245954	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2248993	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2255658	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2518220	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2518221	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2518222	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2518255	1.00[YRI][hapmap]
rs2518289	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2518293	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2518300	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518302	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2749051	1.00[YRI][hapmap]
rs2749070	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2852570	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2852578	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101983200-101991400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:101985600-101988400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:101986000-101988600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:101986000-101991400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:101986600-101993200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:101987200-101988200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:101987200-101988200	Enhancers	HMEC	breast
8	chr6:101987200-101988200	Enhancers	NH-A	brain
9	chr6:101987200-101988400	Enhancers	NHEK	skin
10	chr6:101987400-101988000	Enhancers	HSMM	muscle
11	chr6:101987400-101988000	Enhancers	HSMMtube	muscle
12	chr6:101987400-101988200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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