Variant report

Variant	rs2255414
Chromosome Location	chr6:132878125-132878126
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12527371	0.81[ASN][1000 genomes]
rs17801870	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1933988	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255292	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2255304	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2788944	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2788945	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2840833	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2840834	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132870600-132880400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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