Variant report

Variant	rs2255599
Chromosome Location	chr15:55095272-55095273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55095085..55095585-chr3:11761302..11762189,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144560	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11071127	0.89[ASN][1000 genomes]
rs11071128	0.99[ASN][1000 genomes]
rs11071129	0.99[ASN][1000 genomes]
rs11071130	0.99[ASN][1000 genomes]
rs12592527	0.94[ASN][1000 genomes]
rs12594795	0.96[ASN][1000 genomes]
rs1501399	0.84[ASN][1000 genomes]
rs1846929	0.87[ASN][1000 genomes]
rs2019656	0.93[ASN][1000 genomes]
rs2221239	0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs2251653	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2651743	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2651759	0.87[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2651764	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2695677	0.84[ASN][1000 genomes]
rs2695680	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2695681	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695685	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4774192	0.83[ASN][1000 genomes]
rs7173772	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs924551	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs992348	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1045264	chr15:54981538-55103777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv525041	chr15:55068209-55136755	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55090200-55095600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:55093000-55095800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:55094200-55096800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:55094200-55097200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:55094800-55095400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr15:55094800-55096600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:55095000-55097200	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:55095200-55096200	Enhancers	Hela-S3	cervix

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