Variant report

Variant	rs2255908
Chromosome Location	chr15:93146609-93146610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93145840..93149737-chr15:93196292..93199149,3	MCF-7	breast:
2	chr15:93146362..93148233-chr15:93152029..93154921,2	K562	blood:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12900850	0.90[ASN][1000 genomes]
rs17523840	1.00[JPT][hapmap]
rs28497802	0.92[ASN][1000 genomes]
rs285710	0.93[ASN][1000 genomes]
rs285711	0.93[ASN][1000 genomes]
rs285712	0.97[ASN][1000 genomes]
rs285716	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs285719	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs375548	0.96[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs395678	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs404285	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs410363	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422472	0.86[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs4777726	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6496962	1.00[JPT][hapmap]
rs6496963	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6496964	0.92[ASN][1000 genomes]
rs8035858	1.00[JPT][hapmap]
rs8041521	1.00[JPT][hapmap]
rs8042357	1.00[JPT][hapmap]
rs8042515	1.00[JPT][hapmap]
rs8043510	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
6	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2255908	PLIN1	cis	parietal	SCAN
rs2255908	RP11-386M24.3	cis	Heart Left Ventricle	GTEx
rs2255908	FAM174B	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
3	chr15:93142200-93156400	Weak transcription	Lung	lung
4	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
5	chr15:93142400-93152400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:93143400-93146800	Weak transcription	HSMMtube	muscle
7	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
8	chr15:93144400-93146800	Weak transcription	HSMM	muscle
9	chr15:93144800-93147400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:93145200-93146800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:93145400-93149200	Weak transcription	Left Ventricle	heart
12	chr15:93145400-93151200	Weak transcription	Gastric	stomach
13	chr15:93146600-93146800	Enhancers	Brain Hippocampus Middle	brain
14	chr15:93146600-93146800	Enhancers	Psoas Muscle	Psoas
15	chr15:93146600-93147000	Enhancers	Esophagus	oesophagus
16	chr15:93146600-93147200	Enhancers	Pancreas	Pancrea
17	chr15:93146600-93147600	Enhancers	Fetal Muscle Leg	muscle

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