Variant report

Variant	rs225691
Chromosome Location	chr6:142526470-142526471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs225648	0.89[ASN][1000 genomes]
rs225699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3811083	0.83[ASN][1000 genomes]
rs6940882	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886732	chr6:142290338-142536049	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830824	chr6:142361107-142544929	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142484200-142533800	Weak transcription	Aorta	Aorta
2	chr6:142489000-142543200	Weak transcription	Small Intestine	intestine
3	chr6:142495600-142533600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:142496000-142528600	Weak transcription	Lung	lung
5	chr6:142496200-142527600	Weak transcription	Thymus	Thymus
6	chr6:142496200-142528200	Weak transcription	Fetal Stomach	stomach
7	chr6:142496200-142528400	Weak transcription	Brain Germinal Matrix	brain
8	chr6:142496200-142533800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:142496200-142533800	Weak transcription	Gastric	stomach
10	chr6:142496200-142533800	Weak transcription	Pancreas	Pancrea
11	chr6:142496400-142528000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:142496400-142533600	Weak transcription	Colonic Mucosa	Colon
13	chr6:142496600-142533800	Weak transcription	Left Ventricle	heart
14	chr6:142496600-142546800	Weak transcription	NHLF	lung
15	chr6:142498600-142527800	Weak transcription	Ovary	ovary
16	chr6:142502000-142527800	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:142507800-142533800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:142510400-142534000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:142510400-142534200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:142510800-142534600	Weak transcription	Hela-S3	cervix
21	chr6:142513200-142528400	Weak transcription	Brain Substantia Nigra	brain
22	chr6:142513400-142533600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:142513600-142527400	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:142513600-142527800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:142515400-142541800	Weak transcription	Psoas Muscle	Psoas
26	chr6:142517200-142535400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:142517400-142533400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:142517400-142533800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:142517600-142527000	Weak transcription	A549	lung
30	chr6:142517600-142528200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:142517600-142533200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:142517800-142527800	Weak transcription	NHEK	skin
33	chr6:142517800-142533000	Weak transcription	NH-A	brain
34	chr6:142517800-142533200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:142517800-142533600	Weak transcription	Right Ventricle	heart
36	chr6:142518000-142533800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:142518000-142534400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:142518000-142534400	Weak transcription	Spleen	Spleen
39	chr6:142518200-142527400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:142518200-142533000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:142518800-142528600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr6:142518800-142530200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr6:142518800-142533800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:142519000-142534400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:142519200-142528200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:142519200-142533600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:142519400-142528000	Strong transcription	Dnd41	blood
48	chr6:142519400-142528800	Strong transcription	HepG2	liver
49	chr6:142519400-142529200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr6:142519600-142526600	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links