Variant report

Variant	rs2259641
Chromosome Location	chr3:195680864-195680865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr3:195680552-195680931	GM12878	blood:	n/a	n/a
2	TCF12	chr3:195680578-195680969	GM12878	blood:	n/a	n/a
3	ZBTB33	chr3:195680130-195680974	K562	blood:	n/a	n/a
4	BCL11A	chr3:195680283-195680924	GM12878	blood:	n/a	chr3:195680659-195680668
5	POLR2A	chr3:195680637-195680989	HepG2	liver:	n/a	n/a
6	POLR2A	chr3:195679501-195682054	GM12878	blood:	n/a	n/a
7	POLR2A	chr3:195679137-195680977	SK-N-MC	brain:	n/a	n/a
8	SPI1	chr3:195680190-195680927	K562	blood:	n/a	n/a
9	TAF1	chr3:195680207-195681016	H1-hESC	embryonic stem cell:	n/a	n/a
10	GABPA	chr3:195680299-195680968	Hela-S3	cervix:	n/a	chr3:195680766-195680773
11	POU2F2	chr3:195679447-195680956	GM12891	blood:	n/a	chr3:195680873-195680885
12	POU2F2	chr3:195680378-195680985	GM12878	blood:	n/a	chr3:195680873-195680885
13	POLR2A	chr3:195676418-195683608	GM12878	blood:	n/a	n/a
14	TCF3	chr3:195680276-195681980	GM12878	blood:	n/a	chr3:195681503-195681517
15	PAX5	chr3:195680536-195680878	GM12878	blood:	n/a	n/a
16	ZBTB33	chr3:195680602-195680895	GM12878	blood:	n/a	n/a
17	PAX5	chr3:195679368-195680979	GM12878	blood:	n/a	chr3:195679758-195679767
18	GATA2	chr3:195678797-195680889	K562	blood:	n/a	chr3:195679211-195679220 chr3:195679672-195679682 chr3:195679669-195679685
19	POLR2A	chr3:195680276-195682042	A549	lung:	n/a	n/a
20	SIN3AK20	chr3:195680566-195680962	HepG2	liver:	n/a	n/a
21	POLR2A	chr3:195679060-195681009	GM12878	blood:	n/a	n/a
22	SP1	chr3:195680466-195680921	GM12878	blood:	n/a	n/a
23	TAF1	chr3:195680587-195680926	H1-hESC	embryonic stem cell:	n/a	n/a
24	SPI1	chr3:195680248-195680879	K562	blood:	n/a	n/a
25	POLR2A	chr3:195679165-195681010	GM12891	blood:	n/a	n/a
26	TAF1	chr3:195680133-195680931	Hela-S3	cervix:	n/a	n/a
27	SIN3AK20	chr3:195680275-195680950	HepG2	liver:	n/a	n/a
28	POLR2A	chr3:195680457-195680964	PANC-1	pancreas:	n/a	n/a
29	POLR2A	chr3:195680138-195681006	HepG2	liver:	n/a	n/a
30	PAX5	chr3:195680205-195680967	GM12878	blood:	n/a	n/a
31	SPI1	chr3:195680225-195680879	GM12878	blood:	n/a	n/a
32	POLR2A	chr3:195676490-195683654	GM12892	blood:	n/a	n/a
33	HEY1	chr3:195679066-195682048	K562	blood:	n/a	chr3:195681292-195681307 chr3:195681295-195681310
34	CTCF	chr3:195680780-195680930	MCF-7	breast:	n/a	chr3:195680917-195680930
35	EBF1	chr3:195680604-195680986	GM12878	blood:	n/a	n/a
36	TAF1	chr3:195680585-195682010	HepG2	liver:	n/a	n/a
37	CTCF	chr3:195680720-195680870	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr3:195679109-195680978	GM12891	blood:	n/a	n/a
39	GABPA	chr3:195680636-195680925	Hela-S3	cervix:	n/a	chr3:195680766-195680773
40	POLR2A	chr3:195680564-195681927	A549	lung:	n/a	n/a
41	POLR2A	chr3:195680751-195680913	MCF-7	breast:	n/a	n/a
42	FOSL2	chr3:195679982-195680978	HepG2	liver:	n/a	n/a
43	HEY1	chr3:195676527-195682641	K562	blood:	n/a	chr3:195681292-195681307 chr3:195681295-195681310
44	POLR2A	chr3:195679027-195682134	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr3:195680110-195682109	A549	lung:	n/a	n/a
46	HEY1	chr3:195679499-195681002	HepG2	liver:	n/a	n/a
47	POLR2A	chr3:195680573-195680991	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr3:195680088-195680969	H1-hESC	embryonic stem cell:	n/a	n/a
49	POLR2A	chr3:195680081-195682088	GM12878	blood:	n/a	n/a
50	POLR2A	chr3:195680117-195682041	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:195679874..195682569-chr3:197381110..197382679,2	K562	blood:
2	chr3:195620748..195623055-chr3:195679886..195681403,2	K562	blood:
3	chr3:195679870..195682569-chr3:197379763..197382610,2	K562	blood:
4	chr3:195636473..195638760-chr3:195679951..195681488,2	MCF-7	breast:
5	chr3:195639677..195641924-chr3:195679365..195681428,2	MCF-7	breast:
6	chr3:195620748..195623057-chr3:195678515..195681386,2	K562	blood:
7	chr3:195645901..195648267-chr3:195679890..195681479,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260261	TF binding region
ENSG00000266730	Chromatin interaction
ENSG00000273009	Chromatin interaction
ENSG00000061938	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv428102	chr3:195201080-195829426	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv428430	chr3:195201080-195829426	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
5	nsv1006165	chr3:195383130-195777211	Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
6	nsv471621	chr3:195417664-195795474	Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	esv2756651	chr3:195433543-195696720	Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	nsv432528	chr3:195433543-195696720	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
9	esv2754016	chr3:195433543-195753766	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
10	nsv822410	chr3:195438740-195725565	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
11	nsv1005193	chr3:195526571-195709662	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv530397	chr3:195565159-195740416	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
13	nsv1002629	chr3:195582468-195769275	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
14	nsv829827	chr3:195608866-195760829	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
15	nsv469518	chr3:195623722-195795474	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv482784	chr3:195623722-195795474	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
17	nsv1010395	chr3:195641908-195848264	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
18	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
19	nsv967107	chr3:195648362-195697515	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	nsv10385	chr3:195650964-195739806	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	esv1822059	chr3:195651349-195776737	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	esv1844691	chr3:195651349-195776737	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	esv1820982	chr3:195651349-195835519	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
24	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
25	esv3362647	chr3:195661755-195684553	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
26	esv17805	chr3:195662762-195733839	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
27	nsv820779	chr3:195662762-195733839	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
28	esv1849611	chr3:195662864-195736134	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
29	esv3487234	chr3:195664550-195724142	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
30	esv3487235	chr3:195664550-195724142	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
31	esv1845231	chr3:195664641-195724169	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
32	esv1846114	chr3:195664641-195734827	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	esv3330575	chr3:195665155-195681853	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
34	esv1819244	chr3:195665342-195740346	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
35	esv1844122	chr3:195665730-195715178	Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	esv3515192	chr3:195668506-195727998	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
37	esv3515193	chr3:195668506-195727998	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
38	esv3500060	chr3:195668635-195727950	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
39	esv3500059	chr3:195668717-195728000	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
40	esv1845402	chr3:195672244-195723617	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
41	esv20134	chr3:195673006-195720655	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
42	esv3394221	chr3:195673455-195681753	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
43	esv3512247	chr3:195674252-195722317	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
44	esv3512248	chr3:195674252-195722317	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	esv3331676	chr3:195674350-195722846	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
46	esv3347381	chr3:195675155-195681753	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
47	esv3374493	chr3:195675655-195681853	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
48	esv3323403	chr3:195675655-195682453	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
49	esv1848667	chr3:195675779-195722758	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv511234	chr3:195677895-195717746	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195647200-195681200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:195656600-195681000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:195657800-195681400	Weak transcription	GM12878-XiMat	blood
4	chr3:195659600-195681200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:195659600-195685600	Weak transcription	Small Intestine	intestine
6	chr3:195660000-195681200	Weak transcription	Colonic Mucosa	Colon
7	chr3:195660600-195681200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:195661200-195681000	Weak transcription	Ovary	ovary
9	chr3:195661800-195681200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:195663400-195681200	Weak transcription	Left Ventricle	heart
11	chr3:195663600-195681000	Weak transcription	Fetal Brain Female	brain
12	chr3:195663600-195681200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:195663600-195681200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:195663800-195682000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:195664400-195681200	Weak transcription	Osteobl	bone
16	chr3:195665000-195681200	Weak transcription	Placenta	Placenta
17	chr3:195665200-195691800	Weak transcription	HSMMtube	muscle
18	chr3:195665400-195681400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:195665400-195685200	Weak transcription	Aorta	Aorta
20	chr3:195667200-195681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:195667400-195681200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:195667400-195681200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:195667400-195681200	Weak transcription	Brain Anterior Caudate	brain
24	chr3:195667400-195681200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:195667400-195681200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:195667400-195681200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:195667400-195681400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr3:195667400-195681400	Weak transcription	Brain Substantia Nigra	brain
29	chr3:195667400-195684200	Weak transcription	Spleen	Spleen
30	chr3:195667400-195686200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:195667600-195681200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:195667600-195681200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:195667600-195681200	Weak transcription	Esophagus	oesophagus
34	chr3:195667600-195681400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:195667600-195681600	Weak transcription	Fetal Intestine Large	intestine
36	chr3:195667800-195681200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:195668000-195681200	Weak transcription	Lung	lung
38	chr3:195668200-195682200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:195671400-195681000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:195671600-195681000	Weak transcription	Brain Germinal Matrix	brain
41	chr3:195671600-195681000	Weak transcription	Dnd41	blood
42	chr3:195671600-195681200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:195671800-195681200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr3:195671800-195681200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:195671800-195681200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:195671800-195681600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:195674400-195681000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr3:195674400-195681200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:195674400-195681200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:195674400-195681200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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