Variant report

Variant	rs2261608
Chromosome Location	chr12:48721634-48721635
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48720103..48722242-chr12:48743516..48745701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167528	Chromatin interaction
ENSG00000257735	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1074175	0.92[ASN][1000 genomes]
rs10747532	0.85[ASN][1000 genomes]
rs10783235	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10783240	0.85[ASN][1000 genomes]
rs10783241	0.85[ASN][1000 genomes]
rs10783248	0.93[ASN][1000 genomes]
rs10875766	0.84[CEU][hapmap]
rs10875780	0.85[ASN][1000 genomes]
rs10875781	0.85[ASN][1000 genomes]
rs10875794	0.93[ASN][1000 genomes]
rs10875795	0.89[ASN][1000 genomes]
rs10875796	0.95[ASN][1000 genomes]
rs10875797	0.95[ASN][1000 genomes]
rs10875798	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11168458	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11168470	0.85[ASN][1000 genomes]
rs11168471	0.85[ASN][1000 genomes]
rs11168472	0.85[ASN][1000 genomes]
rs11168473	0.85[ASN][1000 genomes]
rs11168475	0.85[ASN][1000 genomes]
rs11168485	0.85[ASN][1000 genomes]
rs11168494	0.85[ASN][1000 genomes]
rs11168513	0.92[ASN][1000 genomes]
rs11168515	0.91[ASN][1000 genomes]
rs11168532	0.95[ASN][1000 genomes]
rs11168535	0.87[ASN][1000 genomes]
rs11168541	1.00[JPT][hapmap]
rs12422306	0.85[ASN][1000 genomes]
rs12423404	0.93[ASN][1000 genomes]
rs12423529	0.85[ASN][1000 genomes]
rs12810029	0.88[ASN][1000 genomes]
rs12815219	0.85[ASN][1000 genomes]
rs12822431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12824405	0.93[ASN][1000 genomes]
rs12824591	0.87[ASN][1000 genomes]
rs12831063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1387261	0.91[ASN][1000 genomes]
rs1844261	0.85[ASN][1000 genomes]
rs1906717	0.86[JPT][hapmap]
rs2220459	0.92[ASN][1000 genomes]
rs2291483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2409002	0.85[ASN][1000 genomes]
rs2634683	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2634685	0.86[JPT][hapmap]
rs2732458	0.86[JPT][hapmap]
rs2732467	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34157519	0.88[ASN][1000 genomes]
rs35267282	0.95[ASN][1000 genomes]
rs3752820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7136959	0.85[ASN][1000 genomes]
rs716176	0.89[ASN][1000 genomes]
rs7301176	0.86[JPT][hapmap]
rs73116262	0.92[ASN][1000 genomes]
rs7974811	0.93[ASN][1000 genomes]
rs923398	0.97[ASN][1000 genomes]
rs9669444	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758307	chr12:48429702-48825499	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759898	chr12:48429702-48825499	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv8971	chr12:48536526-48758501	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv34439	chr12:48541757-48779562	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv2757502	chr12:48547128-48779562	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv899064	chr12:48664989-48721832	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv832402	chr12:48686761-48851020	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv826362	chr12:48693048-48768853	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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