Variant report

Variant	rs226419
Chromosome Location	chr17:34066557-34066558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10491114	0.87[MKK][hapmap]
rs226433	0.87[MKK][hapmap]
rs226435	0.82[MKK][hapmap]
rs226436	0.87[MKK][hapmap]
rs2278950	0.82[MKK][hapmap]
rs28384428	0.87[MKK][hapmap]
rs3785759	0.82[ASW][hapmap];0.82[MKK][hapmap]
rs7213022	1.00[AMR][1000 genomes]
rs9303689	0.87[MKK][hapmap]
rs9906170	1.00[AMR][1000 genomes]
rs9907911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34059600-34067200	Weak transcription	Spleen	Spleen
2	chr17:34059600-34068000	Weak transcription	Right Ventricle	heart
3	chr17:34060000-34068000	Weak transcription	Right Atrium	heart
4	chr17:34060400-34068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr17:34060600-34067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:34060800-34067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr17:34062600-34068000	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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