Variant report

Variant	rs2265473
Chromosome Location	chr6:146221182-146221183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146220306..146222663-chr6:146235095..146237007,2	K562	blood:
2	chr6:146221103..146223678-chr6:146224120..146226593,3	K562	blood:
3	chr6:146220104..146222683-chr6:146242186..146243850,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2247571	0.81[ASN][1000 genomes]
rs7450076	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv437525	chr6:146212285-146230454	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146198200-146225600	Weak transcription	HSMMtube	muscle
2	chr6:146200400-146228600	Weak transcription	Pancreas	Pancrea
3	chr6:146201200-146225600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:146201200-146230400	Weak transcription	NHEK	skin
5	chr6:146204800-146224800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:146207800-146240200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:146208800-146230000	Weak transcription	Colonic Mucosa	Colon
8	chr6:146210200-146231000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:146210400-146221600	Weak transcription	Psoas Muscle	Psoas
10	chr6:146210400-146230400	Weak transcription	NH-A	brain
11	chr6:146210400-146282000	Weak transcription	Spleen	Spleen
12	chr6:146211200-146224800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:146211600-146236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:146212800-146226000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:146213800-146225000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:146213800-146230400	Weak transcription	HUVEC	blood vessel
17	chr6:146215000-146225800	Weak transcription	Placenta	Placenta
18	chr6:146215000-146242200	Weak transcription	Hela-S3	cervix
19	chr6:146215200-146224600	Weak transcription	HSMM	muscle
20	chr6:146215400-146222400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:146216800-146224600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:146218400-146221800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:146219000-146228000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:146219000-146228000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:146219200-146223800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:146219200-146224000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:146219200-146224400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:146219200-146224600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:146219200-146224600	Weak transcription	NHLF	lung
30	chr6:146219200-146225000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:146219200-146226400	Weak transcription	Brain Angular Gyrus	brain
32	chr6:146219200-146226800	Weak transcription	Fetal Brain Female	brain
33	chr6:146219200-146227800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:146219200-146249200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:146219200-146276600	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:146219400-146224600	Weak transcription	Osteobl	bone
37	chr6:146219600-146222000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:146219600-146250600	Strong transcription	Dnd41	blood
39	chr6:146219800-146221200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:146219800-146221800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:146219800-146222400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:146219800-146222600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:146219800-146224000	Strong transcription	Primary T cells from cord blood	blood
44	chr6:146219800-146226600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr6:146219800-146227800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr6:146219800-146271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:146220000-146221400	Strong transcription	Primary B cells from cord blood	blood
48	chr6:146220000-146221600	Weak transcription	K562	blood
49	chr6:146220000-146222200	Weak transcription	Fetal Brain Male	brain
50	chr6:146220000-146224600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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