Variant report

Variant	rs2268655
Chromosome Location	chr6:39021657-39021658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39014785..39017346-chr6:39021538..39023370,2	K562	blood:

Variant related genes	Relation type
ENSG00000112164	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2268653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2268656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2284795	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027064	chr6:38984374-39034516	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1801734	chr6:38986164-39034484	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528286	chr6:39019503-39060478	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39017200-39030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39017800-39026400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:39018800-39023400	Enhancers	Pancreas	Pancrea
4	chr6:39019400-39022200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:39019400-39022200	Weak transcription	Left Ventricle	heart
6	chr6:39019600-39023600	Weak transcription	Right Atrium	heart
7	chr6:39019800-39022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:39019800-39023800	Weak transcription	Right Ventricle	heart
9	chr6:39020000-39022200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:39020000-39024000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:39020200-39021800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:39020400-39025000	Weak transcription	Dnd41	blood
13	chr6:39020600-39021800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:39020600-39022400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:39020800-39023000	Enhancers	Fetal Intestine Large	intestine
16	chr6:39020800-39023800	Enhancers	Fetal Heart	heart
17	chr6:39021000-39022000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:39021000-39022400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:39021000-39022600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:39021000-39023000	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:39021000-39023000	Enhancers	Fetal Intestine Small	intestine
22	chr6:39021200-39072000	Weak transcription	Gastric	stomach
23	chr6:39021400-39021800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:39021400-39022800	Enhancers	Colonic Mucosa	Colon
25	chr6:39021400-39022800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:39021600-39021800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:39021600-39022200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:39021600-39022400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:39021600-39022600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:39021600-39022600	Enhancers	Stomach Mucosa	stomach
31	chr6:39021600-39022800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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