Variant report

Variant	rs2269827
Chromosome Location	chr7:21814099-21814100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21813998..21816432-chr7:21818719..21821037,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10241767	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11764949	0.88[ASN][1000 genomes]
rs2189020	0.88[ASN][1000 genomes]
rs36121046	0.88[ASN][1000 genomes]
rs7793481	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv5656	chr7:21810397-21816672	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3477144	chr7:21813632-21814232	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3477143	chr7:21813667-21814225	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3477142	chr7:21813692-21814186	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3477145	chr7:21813856-21814118	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21810000-21814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:21811600-21814200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:21812000-21814200	Enhancers	Brain Anterior Caudate	brain
4	chr7:21812000-21814200	Enhancers	Brain Substantia Nigra	brain
5	chr7:21812000-21814400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr7:21812600-21817400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:21812800-21814800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:21813200-21814200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:21813200-21815400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:21813200-21818600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:21813400-21814200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:21813600-21814200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr7:21813600-21814800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:21813800-21814200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:21813800-21814400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:21813800-21814400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:21813800-21814600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr7:21813800-21815600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:21814000-21814200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr7:21814000-21814200	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:21814000-21814400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:21814000-21815200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links