Variant report

Variant	rs2270481
Chromosome Location	chr12:63087821-63087822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63086305..63088144-chr12:63100380..63102991,2	MCF-7	breast:
2	chr12:62996070..62998193-chr12:63086837..63088442,2	MCF-7	breast:
3	chr12:63087268..63091383-chr12:63091807..63093809,4	MCF-7	breast:
4	chr12:63080648..63083389-chr12:63085536..63088456,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12581688	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs1567632	1.00[CEU][hapmap]
rs17098174	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17098204	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2270483	0.87[CHB][hapmap]
rs342168	0.87[CHB][hapmap]
rs3843661	1.00[CEU][hapmap]
rs4763026	0.87[CHB][hapmap]
rs61919539	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61919540	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63069400-63096600	Weak transcription	Fetal Kidney	kidney
4	chr12:63071600-63096400	Weak transcription	Left Ventricle	heart
5	chr12:63072000-63089200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63074200-63092000	Strong transcription	HepG2	liver
7	chr12:63074600-63096400	Weak transcription	Pancreas	Pancrea
8	chr12:63077800-63095400	Weak transcription	Placenta	Placenta
9	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr12:63078200-63091600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr12:63078800-63088200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:63079000-63088000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:63079000-63096400	Weak transcription	Ovary	ovary
14	chr12:63079200-63095000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:63080000-63096400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:63080000-63096400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr12:63080800-63089400	Weak transcription	Thymus	Thymus
18	chr12:63081200-63093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:63082400-63091200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:63083600-63091400	Weak transcription	Adipose Nuclei	Adipose
21	chr12:63083800-63094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr12:63083800-63103000	Weak transcription	Gastric	stomach
23	chr12:63084000-63092000	Weak transcription	Brain Anterior Caudate	brain
24	chr12:63084400-63095000	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:63085200-63095000	Weak transcription	Brain Substantia Nigra	brain
26	chr12:63085400-63095000	Weak transcription	Brain Angular Gyrus	brain
27	chr12:63086000-63088000	Enhancers	NH-A	brain
28	chr12:63086000-63092000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:63086200-63089800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:63086400-63089600	Enhancers	NHLF	lung
31	chr12:63086600-63088200	Enhancers	Fetal Stomach	stomach
32	chr12:63086800-63088000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:63086800-63088000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr12:63086800-63095200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr12:63087000-63088400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:63087000-63095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr12:63087200-63088200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:63087200-63088200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr12:63087200-63088200	Enhancers	Fetal Brain Female	brain
40	chr12:63087200-63090400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr12:63087200-63091800	Weak transcription	HMEC	breast
42	chr12:63087200-63095600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr12:63087200-63113600	Weak transcription	Liver	Liver
44	chr12:63087400-63088400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:63087400-63088800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr12:63087400-63088800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr12:63087400-63089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr12:63087400-63091800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr12:63087400-63095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr12:63087400-63097200	Weak transcription	Fetal Intestine Large	intestine

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