Variant report

Variant	rs2272245
Chromosome Location	chr7:16839501-16839502
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1563778	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1563779	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs1563781	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs34827559	0.84[ASN][1000 genomes]
rs4721545	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv887761	chr7:16834361-17732490	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv887762	chr7:16834361-17746628	Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv887763	chr7:16834361-17750811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
2	chr7:16823600-16843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:16832000-16839600	Strong transcription	Rectal Mucosa Donor 31	rectum
4	chr7:16832400-16840000	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr7:16833600-16839600	Strong transcription	A549	lung
6	chr7:16834000-16842400	Weak transcription	Gastric	stomach
7	chr7:16834200-16839800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr7:16835000-16844200	Weak transcription	Psoas Muscle	Psoas
9	chr7:16835800-16840000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:16838200-16839800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:16838200-16841200	Weak transcription	Colonic Mucosa	Colon
12	chr7:16838400-16840000	Weak transcription	Fetal Stomach	stomach
13	chr7:16838800-16839600	Strong transcription	Fetal Intestine Small	intestine
14	chr7:16838800-16839800	Weak transcription	Stomach Mucosa	stomach
15	chr7:16839200-16839800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:16839200-16841000	Genic enhancers	Fetal Intestine Large	intestine
17	chr7:16839200-16842600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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