Variant report

Variant	rs2273520
Chromosome Location	chr14:31109275-31109276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31090421..31092379-chr14:31107832..31110754,2	MCF-7	breast:
2	chr14:31109175..31111007-chr14:31121039..31122781,2	K562	blood:

Variant related genes	Relation type
ENSG00000092108	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10131166	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10141944	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10146357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147257	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10149966	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11156637	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1123860	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622076	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11623154	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11627421	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11628700	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11846293	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11846408	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11851205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12586678	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12882048	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12882931	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888568	0.81[EUR][1000 genomes]
rs12894186	0.88[EUR][1000 genomes]
rs17096941	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17097023	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038451	0.81[EUR][1000 genomes]
rs2057284	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2070340	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2273521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273522	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs229164	0.83[EUR][1000 genomes]
rs229244	0.83[AMR][1000 genomes]
rs2378780	0.80[AMR][1000 genomes]
rs28567474	0.98[ASN][1000 genomes]
rs34935871	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35069045	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35389182	0.82[EUR][1000 genomes]
rs3736773	0.81[EUR][1000 genomes]
rs4430662	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61976741	0.91[EUR][1000 genomes]
rs6571356	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6571357	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7141333	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7141624	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7149113	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7493549	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs761956	0.94[EUR][1000 genomes]
rs8008094	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8012325	0.80[EUR][1000 genomes]
rs8013017	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018993	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8019637	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv564171	chr14:31068090-31149630	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31092200-31121000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:31092200-31133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:31092200-31133200	Weak transcription	Esophagus	oesophagus
4	chr14:31092400-31122800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:31092800-31113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:31092800-31114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:31093600-31127200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:31093800-31113800	Weak transcription	Brain Substantia Nigra	brain
9	chr14:31093800-31159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:31094000-31111200	Weak transcription	HSMMtube	muscle
11	chr14:31094000-31113200	Weak transcription	Fetal Brain Male	brain
12	chr14:31094000-31122000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:31094200-31111200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:31094200-31121000	Weak transcription	Spleen	Spleen
15	chr14:31094200-31145200	Weak transcription	Small Intestine	intestine
16	chr14:31095200-31112400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:31095200-31119200	Weak transcription	Colonic Mucosa	Colon
18	chr14:31095600-31114400	Weak transcription	Fetal Heart	heart
19	chr14:31095800-31110200	Weak transcription	Stomach Mucosa	stomach
20	chr14:31095800-31111000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr14:31095800-31121000	Weak transcription	Ovary	ovary
22	chr14:31095800-31121000	Weak transcription	Thymus	Thymus
23	chr14:31096000-31111200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:31096000-31116600	Weak transcription	Lung	lung
25	chr14:31096000-31121000	Weak transcription	Pancreas	Pancrea
26	chr14:31096000-31167400	Weak transcription	Gastric	stomach
27	chr14:31096200-31113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr14:31097200-31133800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:31099400-31109400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr14:31099400-31110200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:31099600-31111000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:31099600-31113000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:31099600-31113200	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:31099600-31113200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:31099600-31113600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:31099600-31113600	Strong transcription	HSMM	muscle
37	chr14:31099600-31114200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:31099600-31114400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:31099600-31133800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr14:31099600-31134000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:31100000-31109600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:31100000-31113000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:31100600-31123600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:31101200-31111600	Weak transcription	Fetal Intestine Small	intestine
45	chr14:31101200-31112200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:31101400-31111200	Weak transcription	Fetal Stomach	stomach
47	chr14:31101800-31111200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:31102000-31123600	Strong transcription	NHDF-Ad	bronchial
49	chr14:31102200-31113200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:31102200-31113200	Strong transcription	HepG2	liver

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