Variant report

Variant	rs2276
Chromosome Location	chr4:47476876-47476877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10030377	0.94[JPT][hapmap]
rs13102764	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs13138813	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4356892	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4591574	0.94[JPT][hapmap]
rs4635794	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4695232	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6822230	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6836233	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6836637	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7664913	0.94[JPT][hapmap]
rs7693987	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9998407	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47471200-47487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:47475800-47480800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:47476600-47485800	Weak transcription	Placenta	Placenta
4	chr4:47476800-47477600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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