Variant report

Variant	rs2276976
Chromosome Location	chr4:103964529-103964530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103955365..103957458-chr4:103961742..103964541,2	K562	blood:
2	chr4:103955365..103958080-chr4:103962314..103964541,2	K562	blood:
3	chr4:103960386..103964611-chr4:103965527..103969070,4	K562	blood:

Variant related genes	Relation type
ENSG00000164038	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12506406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133907	0.81[CEU][hapmap]
rs3775972	0.82[ASW][hapmap]
rs7666067	1.00[ASW][hapmap];0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757946	chr4:103780705-104057321	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759270	chr4:103780705-104057321	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103941400-103964800	Weak transcription	HSMM	muscle
2	chr4:103941400-103965200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:103941400-103967200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:103941400-103967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:103941400-103968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:103941400-103968000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:103941400-103969000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:103941400-103969200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:103941400-103974000	Weak transcription	Esophagus	oesophagus
10	chr4:103941400-103975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:103941400-103989400	Weak transcription	NH-A	brain
12	chr4:103941400-103996600	Weak transcription	Lung	lung
13	chr4:103941600-103965400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:103941600-103965400	Weak transcription	NHEK	skin
15	chr4:103941600-103968000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:103941600-103969200	Weak transcription	Adipose Nuclei	Adipose
17	chr4:103941600-103969200	Weak transcription	Fetal Thymus	thymus
18	chr4:103941600-103989000	Weak transcription	HMEC	breast
19	chr4:103941800-103965200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:103941800-103965400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr4:103941800-103969600	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:103941800-103994600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:103942000-103964800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr4:103942000-103965200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:103942000-103969600	Weak transcription	Primary T cells from cord blood	blood
26	chr4:103942000-103994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:103942000-103995200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:103947600-103968000	Weak transcription	NHDF-Ad	bronchial
29	chr4:103947800-103965000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:103947800-103996000	Weak transcription	Brain Angular Gyrus	brain
31	chr4:103948200-103969600	Weak transcription	Left Ventricle	heart
32	chr4:103948600-103970000	Weak transcription	Aorta	Aorta
33	chr4:103951400-103965000	Weak transcription	Fetal Brain Female	brain
34	chr4:103951400-103972400	Weak transcription	NHLF	lung
35	chr4:103952400-103965400	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr4:103952400-103994600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:103952600-103965200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:103952600-103965200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr4:103952800-103965200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr4:103952800-103996600	Weak transcription	Fetal Stomach	stomach
41	chr4:103953000-103965200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:103954000-103973600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:103954000-103996200	Weak transcription	Gastric	stomach
44	chr4:103954200-103965400	Weak transcription	Brain Germinal Matrix	brain
45	chr4:103955600-103968000	Weak transcription	Brain Anterior Caudate	brain
46	chr4:103956000-103970200	Weak transcription	HSMMtube	muscle
47	chr4:103957600-103965200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:103957600-103965400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr4:103957600-103969200	Weak transcription	Fetal Brain Male	brain
50	chr4:103957600-103995400	Weak transcription	Ovary	ovary

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