Variant report

Variant	rs2278411
Chromosome Location	chr19:39436897-39436898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39340101..39342858-chr19:39435561..39437371,2	K562	blood:
2	chr19:39421083..39425618-chr19:39435632..39441753,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128626	Chromatin interaction
ENSG00000104835	Chromatin interaction
ENSG00000104824	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17886215	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39422400-39440600	Weak transcription	NHDF-Ad	bronchial
2	chr19:39422600-39440200	Weak transcription	NH-A	brain
3	chr19:39422600-39440600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr19:39422600-39453000	Weak transcription	HSMMtube	muscle
5	chr19:39423200-39440800	Weak transcription	Fetal Heart	heart
6	chr19:39423600-39440400	Weak transcription	Right Atrium	heart
7	chr19:39423600-39440600	Weak transcription	Gastric	stomach
8	chr19:39424400-39440000	Weak transcription	Fetal Brain Female	brain
9	chr19:39424600-39440200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr19:39424600-39440200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr19:39424800-39440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr19:39424800-39440200	Weak transcription	Brain Substantia Nigra	brain
13	chr19:39425400-39440400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:39425600-39440200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:39425800-39437000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:39425800-39440200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:39425800-39440600	Weak transcription	Esophagus	oesophagus
18	chr19:39425800-39440600	Weak transcription	Left Ventricle	heart
19	chr19:39425800-39440600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr19:39425800-39440600	Weak transcription	Right Ventricle	heart
21	chr19:39425800-39440600	Weak transcription	NHEK	skin
22	chr19:39426000-39440200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr19:39426400-39440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr19:39431400-39440200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr19:39431400-39440600	Weak transcription	HUVEC	blood vessel
26	chr19:39431600-39439600	Strong transcription	Fetal Muscle Leg	muscle
27	chr19:39431800-39440200	Strong transcription	Fetal Intestine Small	intestine
28	chr19:39432000-39440200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr19:39432200-39440200	Strong transcription	Fetal Stomach	stomach
30	chr19:39432400-39439600	Strong transcription	Fetal Muscle Trunk	muscle
31	chr19:39432400-39441800	Strong transcription	A549	lung
32	chr19:39432600-39440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr19:39432800-39440200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr19:39432800-39440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr19:39433200-39438600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr19:39433200-39439600	Strong transcription	Liver	Liver
37	chr19:39433400-39440600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr19:39433600-39440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr19:39433600-39440600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:39433800-39440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr19:39434000-39439200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr19:39434400-39438200	Strong transcription	Ovary	ovary
43	chr19:39434400-39439200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr19:39434400-39439200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr19:39434400-39440000	Strong transcription	Fetal Intestine Large	intestine
46	chr19:39434600-39437200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr19:39434600-39437800	Strong transcription	Colon Smooth Muscle	Colon
48	chr19:39434600-39438400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr19:39434600-39439200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr19:39435000-39437200	Strong transcription	Brain Germinal Matrix	brain

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