Variant report

Variant	rs2279110
Chromosome Location	chr4:91872704-91872705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12646812	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17198799	0.82[EUR][1000 genomes]
rs6851563	0.82[EUR][1000 genomes]
rs72665453	0.81[EUR][1000 genomes]
rs72665455	0.82[EUR][1000 genomes]
rs7672960	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv10533	chr4:91842776-91935992	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91871800-91872800	Enhancers	HMEC	breast
2	chr4:91871800-91879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:91872000-91872800	Weak transcription	Fetal Lung	lung
4	chr4:91872000-91873200	Enhancers	Hela-S3	cervix
5	chr4:91872000-91879600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:91872200-91878200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:91872200-91879000	Weak transcription	Fetal Intestine Large	intestine
8	chr4:91872200-91885600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:91872600-91872800	Enhancers	HUVEC	blood vessel
10	chr4:91872600-91873000	Flanking Active TSS	A549	lung
11	chr4:91872600-91876400	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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