Variant report

Variant	rs2279281
Chromosome Location	chr4:1245277-1245278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:1239447-1245326	K562	blood:	n/a	n/a
2	SETDB1	chr4:1245214-1245803	U2OS	brain:	n/a	n/a
3	POLR2A	chr4:1244783-1245346	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:1245240-1245785	K562	blood:	n/a	n/a
5	POLR2A	chr4:1239852-1245445	GM12892	blood:	n/a	n/a
6	POLR2A	chr4:1244700-1245460	GM12878	blood:	n/a	n/a
7	POLR2A	chr4:1239867-1245313	HepG2	liver:	n/a	n/a
8	POLR2A	chr4:1238878-1245469	GM12878	blood:	n/a	n/a
9	POLR2A	chr4:1244974-1245372	GM12878	blood:	n/a	n/a
10	POLR2A	chr4:1245268-1245464	ProgFib	skin:	n/a	n/a
11	POLR2A	chr4:1244250-1245439	GM12892	blood:	n/a	n/a
12	POLR2A	chr4:1244680-1245341	MCF-7	breast:	n/a	n/a
13	POLR2A	chr4:1242935-1245630	SK-N-MC	brain:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:1158166..1163360-chr4:1238498..1245354,13	MCF-7	breast:
2	chr4:1236833..1250005-chr4:1276188..1292579,54	MCF-7	breast:
3	chr4:1236808..1249320-chr4:1336333..1343819,66	MCF-7	breast:
4	chr4:1240883..1245378-chr4:1339091..1342291,13	K562	blood:
5	chr4:1242091..1248517-chr4:1279714..1285424,16	MCF-7	breast:
6	chr4:1235141..1249133-chr4:1336906..1347308,118	MCF-7	breast:
7	chr4:1239502..1245378-chr4:1336996..1344860,21	K562	blood:
8	chr4:1238004..1248980-chr4:1275065..1286840,30	K562	blood:
9	chr4:1238004..1246805-chr4:1279798..1288475,25	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf42-1	chr4:1244047-1249698	ENSG00000196810.4
2	lnc-C4orf42-1	chr4:1243899-1246795	NONHSAT094687
3	lnc-C4orf42-1	chr4:1244684-1246110	NONHSAT094689
4	lnc-C4orf42-1	chr4:1243899-1246244	NONHSAT094690
5	lnc-C4orf42-1	chr4:1244684-1246358	NONHSAT094691

No data

Variant related genes	Relation type
CTBP1-AS2	TF binding region
CTBP1	TF binding region
ENSG00000090316	Chromatin interaction
ENSG00000273179	Chromatin interaction
ENSG00000163945	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11247983	0.85[CEU][hapmap]
rs11721789	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11727167	0.85[CEU][hapmap]
rs11727987	0.94[EUR][1000 genomes]
rs12499546	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12502916	0.85[CEU][hapmap]
rs12505362	0.94[EUR][1000 genomes]
rs12506095	0.94[EUR][1000 genomes]
rs12508446	0.88[CEU][hapmap]
rs12642410	0.85[CEU][hapmap]
rs12642797	0.95[EUR][1000 genomes]
rs13106092	0.95[EUR][1000 genomes]
rs13110563	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13112706	0.85[CEU][hapmap]
rs13115355	0.94[EUR][1000 genomes]
rs13124444	0.93[EUR][1000 genomes]
rs13124876	0.95[EUR][1000 genomes]
rs13128045	0.85[CEU][hapmap]
rs13132584	0.95[EUR][1000 genomes]
rs13134106	0.85[CEU][hapmap]
rs13148614	0.81[EUR][1000 genomes]
rs13149575	0.85[CEU][hapmap]
rs13149790	0.94[EUR][1000 genomes]
rs13149952	0.85[CEU][hapmap]
rs13150571	0.84[CEU][hapmap]
rs1316393	0.81[CEU][hapmap]
rs1564508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1564509	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17164549	0.87[YRI][hapmap]
rs1732107	0.85[CEU][hapmap]
rs1960426	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2178443	0.87[YRI][hapmap]
rs2291199	1.00[CEU][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes]
rs2335855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2878539	0.93[ASW][hapmap];0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3733338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3755920	0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs3755924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3755927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775092	0.94[EUR][1000 genomes]
rs3775094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775099	0.96[CEU][hapmap]
rs3811733	0.82[YRI][hapmap]
rs3822017	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3915420	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4045131	0.96[CEU][hapmap]
rs4246685	0.84[CEU][hapmap]
rs4405964	0.85[CEU][hapmap]
rs4428235	0.85[CEU][hapmap]
rs4493483	0.85[CEU][hapmap]
rs4516656	0.85[CEU][hapmap]
rs4519749	0.85[CEU][hapmap]
rs4642180	0.84[CEU][hapmap]
rs4974541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974542	0.95[EUR][1000 genomes]
rs4974543	0.95[EUR][1000 genomes]
rs4974544	0.95[EUR][1000 genomes]
rs4974574	0.96[CEU][hapmap]
rs4974575	0.81[EUR][1000 genomes]
rs4974577	0.91[EUR][1000 genomes]
rs4974578	0.92[EUR][1000 genomes]
rs4974582	0.91[CEU][hapmap]
rs900027	0.84[CEU][hapmap]
rs900028	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
6	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
11	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv1002097	chr4:1212573-1320086	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv536986	chr4:1212573-1320086	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	esv1811773	chr4:1228251-1287474	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
23	esv1800629	chr4:1228451-1287274	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	esv1812851	chr4:1228451-1287274	Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
25	esv1823612	chr4:1228451-1287274	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
26	esv1825633	chr4:1228451-1287274	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
27	esv1838677	chr4:1231540-1274734	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
28	nsv822433	chr4:1232688-1246206	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
29	nsv878334	chr4:1232910-1254930	Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	esv1839490	chr4:1237014-1254930	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
31	nsv878335	chr4:1237014-1254930	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
32	nsv878336	chr4:1238859-1254930	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
33	nsv878337	chr4:1240091-1254930	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
34	nsv593287	chr4:1240962-1245277	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
35	esv1837719	chr4:1241752-1245277	Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
36	esv1839051	chr4:1241752-1245277	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
37	esv1841123	chr4:1241752-1245277	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
38	esv1837491	chr4:1241969-1259650	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
39	nsv593297	chr4:1243286-1245386	Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
40	nsv593298	chr4:1244267-1342521	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs2279281	UVSSA	cis	Skin Sun Exposed Lower leg	GTEx
rs2279281	UVSSA	cis	Thyroid	GTEx
rs2279281	MAEA	cis	Thyroid	GTEx
rs2279281	CTBP1-AS2	cis	Thyroid	GTEx
rs2279281	ADD1	cis	cerebellum	SCAN
rs2279281	UVSSA	cis	Whole Blood	GTEx
rs2279281	KIAA1530	cis	parietal	SCAN
rs2279281	MGC21675	cis	multi-tissue	Pritchard
rs2279281	CRIPAK	cis	cerebellum	SCAN
rs2279281	MAEA	cis	Nerve Tibial	GTEx
rs2279281	CTBP1	Cis_1M	lymphoblastoid	RTeQTL
rs2279281	C4orf42	cis	multi-tissue	Pritchard
rs2279281	C4orf42	cis	cerebellum	SCAN
rs2279281	CRIPAK	cis	Thyroid	GTEx
rs2279281	CTBP1	cis	multi-tissue	Pritchard
rs2279281	MAEA	cis	cerebellum	SCAN
rs2279281	CRIPAK	cis	parietal	SCAN
rs2279281	KIAA1530	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1243600-1245400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
2	chr4:1243600-1245400	ZNF genes & repeats	Fetal Intestine Large	intestine
3	chr4:1243600-1248000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:1243800-1245800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:1243800-1247400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:1243800-1248200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr4:1244000-1245400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:1244000-1245400	ZNF genes & repeats	HSMM	muscle
9	chr4:1244000-1245600	ZNF genes & repeats	A549	lung
10	chr4:1244000-1245800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:1244000-1245800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:1244000-1245800	Enhancers	Fetal Brain Male	brain
13	chr4:1244000-1246000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr4:1244000-1246800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:1244000-1247200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr4:1244000-1247200	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr4:1244000-1247400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr4:1244000-1247400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr4:1244000-1247400	ZNF genes & repeats	Placenta	Placenta
20	chr4:1244000-1247600	ZNF genes & repeats	Fetal Stomach	stomach
21	chr4:1244200-1245400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr4:1244200-1245400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr4:1244200-1245400	Enhancers	Left Ventricle	heart
24	chr4:1244200-1245400	Enhancers	Ovary	ovary
25	chr4:1244200-1245600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:1244200-1245800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:1244200-1245800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:1244200-1245800	Enhancers	Right Atrium	heart
29	chr4:1244200-1247000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:1244200-1247800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:1244200-1248400	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr4:1244200-1249200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr4:1244200-1249400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr4:1244200-1249800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:1244400-1245400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
36	chr4:1244400-1245400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr4:1244400-1245400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:1244400-1245400	Genic enhancers	Thymus	Thymus
39	chr4:1244400-1245600	ZNF genes & repeats	Esophagus	oesophagus
40	chr4:1244400-1245800	Strong transcription	Placenta Amnion	Placenta Amnion
41	chr4:1244400-1245800	Genic enhancers	Right Ventricle	heart
42	chr4:1244400-1245800	ZNF genes & repeats	NHEK	skin
43	chr4:1244400-1246000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:1244400-1246000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:1244400-1246000	ZNF genes & repeats	Fetal Thymus	thymus
46	chr4:1244400-1247600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:1244400-1249000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:1244600-1245400	Genic enhancers	Liver	Liver
49	chr4:1244600-1245400	Enhancers	Colonic Mucosa	Colon
50	chr4:1244600-1245400	ZNF genes & repeats	NHDF-Ad	bronchial

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