Variant report

Variant	rs2279376
Chromosome Location	chr15:74592266-74592267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12592974	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12595816	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs2277604	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs2279375	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279377	0.81[ASN][1000 genomes]
rs351190	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs351191	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs351192	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3809541	1.00[CEU][hapmap]
rs57011055	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74585800-74592400	Weak transcription	Fetal Brain Female	brain
3	chr15:74591600-74597400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr15:74592000-74592400	Active TSS	Spleen	Spleen
5	chr15:74592000-74592600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr15:74592000-74592600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:74592000-74592600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:74592000-74594000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74592200-74592400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:74592200-74592400	Enhancers	Fetal Brain Male	brain
11	chr15:74592200-74592600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr15:74592200-74592600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr15:74592200-74592600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr15:74592200-74592800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:74592200-74592800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr15:74592200-74593600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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