The 2.0 version of rSNPBase

Variant report

Variant rs2279609
Chromosome Location chr15:57847916-57847917
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:57837800-57853000 Weak transcription Colon Smooth Muscle Colon
2 chr15:57840800-57848000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr15:57840800-57849400 Enhancers Fetal Muscle Leg muscle
4 chr15:57841000-57848000 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr15:57841000-57848600 Enhancers HSMMtube muscle
6 chr15:57842800-57848600 Enhancers Skeletal Muscle Male skeletal muscle
7 chr15:57843000-57848400 Enhancers Placenta Placenta
8 chr15:57843000-57848600 Enhancers Fetal Lung lung
9 chr15:57844200-57848800 Enhancers Fetal Heart heart
10 chr15:57844600-57852200 Weak transcription HepG2 liver
11 chr15:57844600-57859000 Weak transcription H9 Cell Line embryonic stem cell
12 chr15:57844800-57848600 Enhancers Hela-S3 cervix
13 chr15:57844800-57857400 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr15:57845200-57852400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr15:57845200-57857600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr15:57845400-57848000 Enhancers Brain Hippocampus Middle brain
17 chr15:57845400-57848600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr15:57846000-57848400 Enhancers HSMM muscle
19 chr15:57846200-57852400 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr15:57846400-57848000 Enhancers Fetal Kidney kidney
21 chr15:57846400-57848200 Enhancers NH-A brain
22 chr15:57846400-57848400 Enhancers Muscle Satellite Cultured Cells --
23 chr15:57846800-57848400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
24 chr15:57846800-57861400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr15:57847000-57854600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr15:57847200-57853400 Weak transcription NHEK skin
27 chr15:57847200-57854400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr15:57847400-57848600 Enhancers Psoas Muscle Psoas
29 chr15:57847400-57852200 Weak transcription Duodenum Mucosa Duodenum
30 chr15:57847600-57849000 Enhancers HUVEC blood vessel
31 chr15:57847600-57851800 Weak transcription Liver Liver
32 chr15:57847600-57852200 Weak transcription A549 lung
33 chr15:57847600-57852200 Weak transcription HMEC breast
34 chr15:57847600-57853400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr15:57847600-57854400 Weak transcription Pancreas Pancrea
36 chr15:57847600-57859200 Weak transcription Right Ventricle heart
37 chr15:57847800-57848200 Weak transcription Fetal Muscle Trunk muscle
38 chr15:57847800-57848600 Weak transcription Brain Anterior Caudate brain
39 chr15:57847800-57850200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr15:57847800-57852000 Weak transcription Stomach Mucosa stomach
41 chr15:57847800-57852400 Weak transcription Fetal Intestine Large intestine
42 chr15:57847800-57852400 Weak transcription Stomach Smooth Muscle stomach
43 chr15:57847800-57852600 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr15:57847800-57853600 Weak transcription Fetal Stomach stomach
45 chr15:57847800-57859000 Weak transcription Gastric stomach
46 chr15:57847800-57859200 Weak transcription Ovary ovary
47 chr15:57847800-57859200 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015