Variant report

Variant	rs2279741
Chromosome Location	chr3:159744261-159744262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10433458	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13065738	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13096549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914117	0.90[YRI][hapmap]
rs4679868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs638274	0.87[YRI][hapmap]
rs6441286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66785795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778021	0.85[YRI][hapmap]
rs9824967	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852519	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9877910	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9881959	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159741600-159744600	Weak transcription	NH-A	brain
2	chr3:159741600-159744600	Weak transcription	NHLF	lung
3	chr3:159741600-159744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:159741600-159745200	Weak transcription	HMEC	breast
5	chr3:159742200-159744400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:159742200-159744400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:159742200-159744600	Weak transcription	NHDF-Ad	bronchial
8	chr3:159743000-159744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:159743000-159744800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:159743600-159745400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:159743600-159747400	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:159744000-159747000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:159744200-159744600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:159744200-159744800	Enhancers	GM12878-XiMat	blood
16	chr3:159744200-159745600	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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