Variant report

Variant	rs2281910
Chromosome Location	chr11:34668143-34668144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34665923..34668324-chr11:34669277..34671241,3	MCF-7	breast:
2	chr11:34667026..34669860-chr11:34670729..34674074,4	MCF-7	breast:
3	chr11:34667165..34669347-chr11:34670992..34673618,3	K562	blood:
4	chr11:34667496..34668402-chr11:34912241..34912981,2	K562	blood:
5	chr11:34661817..34664108-chr11:34666612..34669231,3	MCF-7	breast:
6	chr11:34666390..34669350-chr11:34705464..34707840,2	K562	blood:

Variant related genes	Relation type
ENSG00000149089	Chromatin interaction
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10488739	0.90[CEU][hapmap]
rs7940320	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34656200-34674400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:34660400-34672000	Weak transcription	Lung	lung
3	chr11:34663400-34671800	Enhancers	A549	lung
4	chr11:34664200-34669400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:34664400-34670400	Weak transcription	Fetal Stomach	stomach
6	chr11:34664400-34677000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:34664800-34669600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:34665200-34669600	Enhancers	NHDF-Ad	bronchial
10	chr11:34665400-34671600	Weak transcription	K562	blood
11	chr11:34665600-34668200	Genic enhancers	Duodenum Mucosa	Duodenum
12	chr11:34666400-34668200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:34666400-34672800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:34666600-34669200	Weak transcription	Small Intestine	intestine
15	chr11:34666600-34672000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:34666800-34668200	Enhancers	Hela-S3	cervix
17	chr11:34666800-34668800	Weak transcription	HSMM	muscle
18	chr11:34666800-34669400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:34666800-34669400	Genic enhancers	NHEK	skin
20	chr11:34666800-34670200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr11:34666800-34673200	Weak transcription	HepG2	liver
22	chr11:34667200-34669400	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr11:34667200-34671400	Weak transcription	NHLF	lung
24	chr11:34667200-34673600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:34667400-34668200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:34667400-34668800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:34667400-34668800	Weak transcription	Stomach Mucosa	stomach
28	chr11:34667400-34668800	Weak transcription	HMEC	breast
29	chr11:34667400-34668800	Weak transcription	HSMMtube	muscle
30	chr11:34667400-34669000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:34667400-34681800	Weak transcription	Fetal Kidney	kidney
32	chr11:34667600-34669400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:34667600-34671800	Weak transcription	NH-A	brain
34	chr11:34667600-34672200	Genic enhancers	Esophagus	oesophagus
35	chr11:34667600-34674000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:34667800-34668200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:34667800-34668200	Genic enhancers	Pancreas	Pancrea
38	chr11:34667800-34668400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:34667800-34669200	Strong transcription	Gastric	stomach
40	chr11:34667800-34670000	Strong transcription	Colonic Mucosa	Colon
41	chr11:34667800-34672600	Strong transcription	Fetal Intestine Small	intestine
42	chr11:34667800-34672800	Weak transcription	Brain Substantia Nigra	brain
43	chr11:34668000-34671600	Weak transcription	Osteobl	bone
44	chr11:34668000-34672200	Weak transcription	Brain Cingulate Gyrus	brain

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