Variant report

Variant	rs2282599
Chromosome Location	chr4:86952362-86952363
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86951249..86952929-chr4:86954553..86956104,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs171106	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
3	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
5	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
6	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
7	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:86936800-86953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
11	chr4:86938400-86953400	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:86938600-86953400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:86938600-86953600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:86938600-86954000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
16	chr4:86939200-86953800	Weak transcription	Fetal Stomach	stomach
17	chr4:86944600-86954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:86946400-86954000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:86946600-86953200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:86948200-86953800	Weak transcription	Lung	lung
23	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:86948600-86953400	Weak transcription	Left Ventricle	heart
25	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:86949400-86953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:86950600-86959200	Weak transcription	Fetal Brain Male	brain
28	chr4:86950600-86967000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:86952200-86952400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:86952200-86956000	Weak transcription	Spleen	Spleen

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