Variant report

Variant	rs2284169
Chromosome Location	chr6:30172385-30172386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30168637..30170794-chr6:30170971..30172497,2	K562	blood:
2	chr6:30171048..30173110-chr6:30293211..30295318,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231074	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000270604	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1060916	0.91[EUR][1000 genomes]
rs1345229	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2072107	0.90[EUR][1000 genomes]
rs4449668	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6905949	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261567	0.91[EUR][1000 genomes]
rs9261574	0.89[EUR][1000 genomes]
rs9261602	0.83[ASN][1000 genomes]
rs9261625	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2284169	HIST1H2AM	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
3	chr6:30150600-30179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:30152000-30172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:30156800-30174600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:30158200-30173600	Weak transcription	Psoas Muscle	Psoas
7	chr6:30158400-30179600	Weak transcription	Fetal Brain Male	brain
8	chr6:30167000-30173000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:30167000-30178000	Weak transcription	Fetal Brain Female	brain
10	chr6:30168400-30174000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:30168600-30172800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:30168600-30174000	Weak transcription	NH-A	brain
13	chr6:30168600-30174000	Weak transcription	NHLF	lung
14	chr6:30168800-30173400	Weak transcription	Gastric	stomach
15	chr6:30168800-30174800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:30168800-30179800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:30169000-30172600	Weak transcription	Esophagus	oesophagus
18	chr6:30169000-30173000	Weak transcription	Thymus	Thymus
19	chr6:30169000-30173200	Weak transcription	Pancreas	Pancrea
20	chr6:30169000-30173400	Weak transcription	Left Ventricle	heart
21	chr6:30169000-30173800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:30169000-30173800	Weak transcription	NHDF-Ad	bronchial
23	chr6:30169000-30174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:30169000-30174000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:30169000-30174000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:30169000-30174000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:30169000-30174000	Weak transcription	Right Ventricle	heart
28	chr6:30169000-30174000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:30169000-30174200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:30169000-30174400	Weak transcription	Fetal Kidney	kidney
31	chr6:30169000-30174600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:30169000-30174600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:30169000-30174600	Weak transcription	Colonic Mucosa	Colon
34	chr6:30169000-30174600	Weak transcription	Fetal Lung	lung
35	chr6:30169000-30174800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:30169000-30175000	Weak transcription	Ovary	ovary
37	chr6:30169000-30175000	Weak transcription	HUVEC	blood vessel
38	chr6:30169000-30175200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:30169000-30175400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:30169000-30179800	Weak transcription	Aorta	Aorta
41	chr6:30169200-30173800	Weak transcription	Osteobl	bone
42	chr6:30169400-30174000	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:30169400-30174200	Enhancers	Liver	Liver
44	chr6:30169400-30175200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:30170000-30173000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:30170000-30173400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:30170000-30173600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:30170000-30174000	Weak transcription	Adipose Nuclei	Adipose
49	chr6:30170000-30174600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:30170200-30173200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links