Variant report

Variant	rs2286177
Chromosome Location	chr7:26596123-26596124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26592279..26596183-chr7:26596578..26600236,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf71-1	chr7:26594428-26596819	ENSG00000233760

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1029555	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1859601	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040944	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107996	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4275130	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4483061	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552808	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722610	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959388	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6959391	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs757580	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7789704	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26588000-26596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
3	chr7:26591600-26600000	Weak transcription	Hela-S3	cervix
4	chr7:26593600-26607000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:26593800-26596600	Enhancers	Fetal Stomach	stomach
6	chr7:26594800-26596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:26595200-26596600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:26595400-26596400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:26595400-26596400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:26595400-26596600	Enhancers	Fetal Brain Male	brain
11	chr7:26595400-26596600	Enhancers	Fetal Heart	heart
12	chr7:26595600-26596200	Enhancers	Brain Anterior Caudate	brain
13	chr7:26595600-26596400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:26595600-26596400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:26595600-26596600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:26595600-26596600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:26595600-26596600	Enhancers	Fetal Kidney	kidney
18	chr7:26595800-26596200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:26595800-26596200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:26595800-26596200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr7:26595800-26596400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:26595800-26596400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:26595800-26596400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:26595800-26596400	Enhancers	Fetal Muscle Leg	muscle
25	chr7:26595800-26596400	Enhancers	Lung	lung
26	chr7:26595800-26596600	Enhancers	Fetal Lung	lung
27	chr7:26596000-26596200	Enhancers	Primary hematopoietic stem cells	blood
28	chr7:26596000-26596600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr7:26596000-26596600	Enhancers	Brain Germinal Matrix	brain
30	chr7:26596000-26596600	Enhancers	Fetal Brain Female	brain

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