Variant report

Variant	rs2286178
Chromosome Location	chr7:26596246-26596247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf71-1	chr7:26594428-26596819	ENSG00000233760

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10246255	0.98[ASN][1000 genomes]
rs11762404	0.99[ASN][1000 genomes]
rs1557986	0.96[ASN][1000 genomes]
rs2391301	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4624932	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461954	0.99[ASN][1000 genomes]
rs740188	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26588000-26596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
3	chr7:26591600-26600000	Weak transcription	Hela-S3	cervix
4	chr7:26593600-26607000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:26593800-26596600	Enhancers	Fetal Stomach	stomach
6	chr7:26595200-26596600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:26595400-26596400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:26595400-26596400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:26595400-26596600	Enhancers	Fetal Brain Male	brain
10	chr7:26595400-26596600	Enhancers	Fetal Heart	heart
11	chr7:26595600-26596400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:26595600-26596400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:26595600-26596600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:26595600-26596600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:26595600-26596600	Enhancers	Fetal Kidney	kidney
16	chr7:26595800-26596400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:26595800-26596400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:26595800-26596400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:26595800-26596400	Enhancers	Fetal Muscle Leg	muscle
20	chr7:26595800-26596400	Enhancers	Lung	lung
21	chr7:26595800-26596600	Enhancers	Fetal Lung	lung
22	chr7:26596000-26596600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:26596000-26596600	Enhancers	Brain Germinal Matrix	brain
24	chr7:26596000-26596600	Enhancers	Fetal Brain Female	brain
25	chr7:26596200-26596400	Bivalent Enhancer	Fetal Intestine Large	intestine

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