Variant report

Variant	rs2287603
Chromosome Location	chr2:211426974-211426975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10932339	1.00[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12694202	0.82[JPT][hapmap]
rs12694203	0.82[JPT][hapmap]
rs1509820	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2007748	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2370998	0.82[JPT][hapmap]
rs58133833	0.90[ASN][1000 genomes]
rs7573258	0.82[JPT][hapmap]
rs7580046	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7603241	1.00[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:211422600-211427800	Weak transcription	Fetal Kidney	kidney
3	chr2:211423600-211432600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:211423800-211428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:211423800-211432600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:211426400-211427200	Weak transcription	Fetal Intestine Large	intestine
7	chr2:211426400-211427600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:211426400-211432400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:211426600-211427200	Weak transcription	Fetal Intestine Small	intestine
10	chr2:211426600-211427800	Enhancers	Hela-S3	cervix
11	chr2:211426800-211427200	Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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