Variant report

Variant	rs228823
Chromosome Location	chr6:39111824-39111825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1019772	0.81[EUR][1000 genomes]
rs1366322	0.84[AMR][1000 genomes]
rs1366324	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1366325	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1544934	0.84[AMR][1000 genomes]
rs1835004	0.81[EUR][1000 genomes]
rs1896681	0.84[AMR][1000 genomes]
rs2162838	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs228803	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs228819	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs228820	0.96[ASN][1000 genomes]
rs2815056	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2815075	0.84[AMR][1000 genomes]
rs2815079	0.84[AMR][1000 genomes]
rs412724	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39109400-39112800	Weak transcription	Left Ventricle	heart
2	chr6:39109600-39113800	Enhancers	Adipose Nuclei	Adipose
3	chr6:39110800-39112400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:39110800-39114400	Enhancers	Fetal Lung	lung
5	chr6:39111000-39112200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:39111600-39113000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:39111800-39112200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:39111800-39113000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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