Variant report

Variant	rs2289344
Chromosome Location	chr5:91628224-91628225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6867693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73771853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73771859	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73773838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2289344	HSPA6	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91625200-91629000	Enhancers	Fetal Heart	heart
2	chr5:91627000-91628600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:91627200-91629000	Enhancers	A549	lung
4	chr5:91627600-91628600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:91627600-91628600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:91628000-91628400	Enhancers	Stomach Mucosa	stomach
7	chr5:91628000-91628400	Enhancers	NHDF-Ad	bronchial
8	chr5:91628000-91628400	Enhancers	NHLF	lung
9	chr5:91628000-91628600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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