Variant report

Variant	rs2289896
Chromosome Location	chr2:114030925-114030926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113996531..113999009-chr2:114030396..114033362,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSD4-1	chr2:114023053-114034158	ENSG00000189223.9

Variant related genes	Relation type
ENSG00000258395	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3738911	0.89[EUR][1000 genomes]
rs3768767	0.84[EUR][1000 genomes]
rs3768768	0.84[EUR][1000 genomes]
rs4322837	0.89[EUR][1000 genomes]
rs58013292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59641602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508162	chr2:113983043-114099966	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv535895	chr2:114015492-114037018	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv874901	chr2:114022569-114079565	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv998204	chr2:114023917-114075446	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114023200-114039800	Weak transcription	Gastric	stomach
2	chr2:114026600-114033400	Weak transcription	Lung	lung
3	chr2:114026600-114034400	Weak transcription	Pancreas	Pancrea
4	chr2:114030000-114031000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr2:114030200-114031000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:114030200-114031000	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:114030200-114031000	Bivalent Enhancer	Primary T cells from cord blood	blood
8	chr2:114030200-114031000	Bivalent Enhancer	Fetal Thymus	thymus
9	chr2:114030200-114031000	Enhancers	HepG2	liver
10	chr2:114030200-114031200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr2:114030200-114033000	Enhancers	A549	lung
12	chr2:114030200-114033400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:114030400-114031000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
14	chr2:114030400-114031000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:114030400-114031000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr2:114030400-114031000	Enhancers	HMEC	breast
17	chr2:114030400-114031400	Bivalent/Poised TSS	Fetal Kidney	kidney
18	chr2:114030600-114031000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:114030600-114031000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:114030600-114031000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr2:114030600-114031000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr2:114030600-114031000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:114030600-114031000	Bivalent Enhancer	Stomach Mucosa	stomach
24	chr2:114030600-114031000	Bivalent Enhancer	NH-A	brain
25	chr2:114030600-114031200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr2:114030800-114031000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr2:114030800-114031000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:114030800-114031000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
29	chr2:114030800-114031000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:114030800-114031000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:114030800-114031000	Bivalent Enhancer	Brain Angular Gyrus	brain
32	chr2:114030800-114031000	Bivalent Enhancer	Fetal Intestine Large	intestine
33	chr2:114030800-114031000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
34	chr2:114030800-114031200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
35	chr2:114030800-114031200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
36	chr2:114030800-114031200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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