Variant report

Variant	rs2290126
Chromosome Location	chr2:98319478-98319479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:98317619..98320456-chr2:98324086..98325839,2	MCF-7	breast:
2	chr2:98279781..98283604-chr2:98316851..98320618,5	K562	blood:
3	chr2:98277866..98283604-chr2:98316329..98321534,8	K562	blood:
4	chr2:98318005..98319783-chr2:98322121..98325274,4	K562	blood:
5	chr2:98317266..98319874-chr2:98357687..98360540,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZAP70-2	chr2:98319132-98319519	ENSG00000228486.2
2	lnc-ZAP70-2	chr2:98319132-98319523	ENSG00000228486.5
3	lnc-ZAP70-2	chr2:98319132-98319487	ENSG00000228486.5
4	lnc-ZAP70-2	chr2:98319132-98319503	ENSG00000228486.5
5	lnc-ZAP70-2	chr2:98319132-98319517	ENSG00000228486.5
6	lnc-ZAP70-2	chr2:98319132-98319529	NR_038386
7	lnc-ZAP70-2	chr2:98319132-98319527	ENSG00000228486.5

No data

Variant related genes	Relation type
ENSG00000115073	Chromatin interaction
ENSG00000228486	Chromatin interaction
ENSG00000201806	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17028771	0.94[ASN][1000 genomes]
rs17695937	0.89[ASN][1000 genomes]
rs2071038	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290123	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2290127	0.94[ASN][1000 genomes]
rs34459720	0.94[ASN][1000 genomes]
rs35321033	0.94[ASN][1000 genomes]
rs35530168	0.94[ASN][1000 genomes]
rs55757705	0.94[ASN][1000 genomes]
rs55766309	0.94[ASN][1000 genomes]
rs55933640	0.94[ASN][1000 genomes]
rs56035334	0.94[ASN][1000 genomes]
rs56233535	0.94[ASN][1000 genomes]
rs56717024	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58321192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58383658	0.91[ASN][1000 genomes]
rs59021370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59060391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59168350	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60226695	1.00[EUR][1000 genomes]
rs62157581	0.94[ASN][1000 genomes]
rs6542982	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6753752	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72951131	1.00[ASN][1000 genomes]
rs7425883	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757819	chr2:97571109-98336507	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
2	esv2759077	chr2:97571109-98336507	Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
3	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv874696	chr2:98309882-98362907	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv33510	chr2:98317103-98341302	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98281000-98323800	Weak transcription	Gastric	stomach
2	chr2:98306000-98322400	Weak transcription	Fetal Stomach	stomach
3	chr2:98312800-98324600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:98316400-98324000	Weak transcription	Pancreas	Pancrea
5	chr2:98317600-98319600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:98318000-98324000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:98318600-98323800	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:98318800-98319600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:98319200-98319600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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