Variant report

Variant	rs229110
Chromosome Location	chr21:28241134-28241135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs162490	0.85[EUR][1000 genomes]
rs162498	0.84[EUR][1000 genomes]
rs162516	0.87[EUR][1000 genomes]
rs162520	0.87[EUR][1000 genomes]
rs162521	0.87[EUR][1000 genomes]
rs162531	0.88[EUR][1000 genomes]
rs162532	0.88[EUR][1000 genomes]
rs162533	0.88[EUR][1000 genomes]
rs162534	0.87[EUR][1000 genomes]
rs162535	0.88[EUR][1000 genomes]
rs162536	0.88[EUR][1000 genomes]
rs162537	0.88[EUR][1000 genomes]
rs162538	0.91[EUR][1000 genomes]
rs162539	0.92[EUR][1000 genomes]
rs162540	0.92[EUR][1000 genomes]
rs162541	0.92[EUR][1000 genomes]
rs229060	0.87[EUR][1000 genomes]
rs229061	0.87[EUR][1000 genomes]
rs229063	0.87[EUR][1000 genomes]
rs229064	0.87[EUR][1000 genomes]
rs229069	0.87[EUR][1000 genomes]
rs229071	0.87[EUR][1000 genomes]
rs229076	0.87[EUR][1000 genomes]
rs229078	0.86[EUR][1000 genomes]
rs229079	0.80[EUR][1000 genomes]
rs229087	0.86[EUR][1000 genomes]
rs229088	0.86[EUR][1000 genomes]
rs229089	0.86[EUR][1000 genomes]
rs229091	0.85[EUR][1000 genomes]
rs229093	0.92[EUR][1000 genomes]
rs229095	0.92[EUR][1000 genomes]
rs229097	0.92[EUR][1000 genomes]
rs229103	0.89[EUR][1000 genomes]
rs229109	0.96[EUR][1000 genomes]
rs233900	0.80[EUR][1000 genomes]
rs2830556	0.89[EUR][1000 genomes]
rs2830558	0.92[EUR][1000 genomes]
rs389125	0.93[EUR][1000 genomes]
rs431134	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1057400	chr21:28104936-28359948	Strong transcription Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv834068	chr21:28179670-28360808	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28240600-28241600	Enhancers	Pancreas	Pancrea

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