Variant report

Variant	rs2292524
Chromosome Location	chr4:69879718-69879719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10012215	0.91[ASN][1000 genomes]
rs10012240	0.87[ASN][1000 genomes]
rs10012607	0.92[ASN][1000 genomes]
rs10021748	0.90[ASN][1000 genomes]
rs10030220	0.92[ASN][1000 genomes]
rs11725519	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12501837	0.92[ASN][1000 genomes]
rs12509175	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12648808	0.81[ASN][1000 genomes]
rs12648830	0.81[ASN][1000 genomes]
rs13102620	0.92[ASN][1000 genomes]
rs13116752	0.92[ASN][1000 genomes]
rs13127081	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13140844	0.92[ASN][1000 genomes]
rs13147569	0.92[ASN][1000 genomes]
rs13147648	0.92[ASN][1000 genomes]
rs28775401	0.85[ASN][1000 genomes]
rs28801471	0.87[ASN][1000 genomes]
rs3922514	0.88[ASN][1000 genomes]
rs4235106	0.80[AMR][1000 genomes]
rs4235108	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4235111	0.92[ASN][1000 genomes]
rs4235112	0.92[ASN][1000 genomes]
rs4235113	0.84[ASN][1000 genomes]
rs4235114	0.90[ASN][1000 genomes]
rs4299665	0.92[ASN][1000 genomes]
rs4299666	0.92[ASN][1000 genomes]
rs4305590	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4312824	0.92[ASN][1000 genomes]
rs4351079	0.92[ASN][1000 genomes]
rs4353969	0.92[ASN][1000 genomes]
rs4365792	0.92[ASN][1000 genomes]
rs4377650	0.92[ASN][1000 genomes]
rs4400061	0.81[ASN][1000 genomes]
rs4410590	0.81[ASN][1000 genomes]
rs4412058	0.81[ASN][1000 genomes]
rs4413468	0.88[ASN][1000 genomes]
rs4422474	0.92[ASN][1000 genomes]
rs4440295	0.84[ASN][1000 genomes]
rs4446390	0.81[ASN][1000 genomes]
rs4481286	0.90[ASN][1000 genomes]
rs4495114	0.92[ASN][1000 genomes]
rs4516791	0.81[ASN][1000 genomes]
rs4518318	0.90[ASN][1000 genomes]
rs4583828	0.90[ASN][1000 genomes]
rs4591680	0.92[ASN][1000 genomes]
rs4607293	0.92[ASN][1000 genomes]
rs4694159	0.80[ASN][1000 genomes]
rs4694160	0.81[ASN][1000 genomes]
rs4694551	0.81[AMR][1000 genomes]
rs4694588	0.92[ASN][1000 genomes]
rs4694597	0.81[ASN][1000 genomes]
rs4694599	0.81[ASN][1000 genomes]
rs4694602	0.81[ASN][1000 genomes]
rs4694604	0.81[ASN][1000 genomes]
rs4694605	0.81[ASN][1000 genomes]
rs4694607	0.81[ASN][1000 genomes]
rs4694610	0.81[ASN][1000 genomes]
rs4694611	0.81[ASN][1000 genomes]
rs56879009	0.81[ASN][1000 genomes]
rs57386454	0.89[ASN][1000 genomes]
rs60212682	0.90[ASN][1000 genomes]
rs60814050	0.86[ASN][1000 genomes]
rs61612343	0.81[ASN][1000 genomes]
rs6422321	0.92[ASN][1000 genomes]
rs6422322	0.88[ASN][1000 genomes]
rs6600865	0.87[ASN][1000 genomes]
rs6600867	0.81[ASN][1000 genomes]
rs6827511	0.93[ASN][1000 genomes]
rs6850053	0.90[ASN][1000 genomes]
rs72851338	0.84[ASN][1000 genomes]
rs72851348	0.90[ASN][1000 genomes]
rs72852416	0.81[ASN][1000 genomes]
rs72852450	0.80[ASN][1000 genomes]
rs7434389	0.81[ASN][1000 genomes]
rs7435274	0.90[ASN][1000 genomes]
rs7436912	0.81[ASN][1000 genomes]
rs7438033	0.87[ASN][1000 genomes]
rs7438808	0.92[ASN][1000 genomes]
rs7441736	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7442394	0.81[ASN][1000 genomes]
rs7654272	0.81[ASN][1000 genomes]
rs7657426	0.81[ASN][1000 genomes]
rs7658748	0.81[ASN][1000 genomes]
rs7662632	0.88[ASN][1000 genomes]
rs7666894	0.81[ASN][1000 genomes]
rs7674573	0.81[ASN][1000 genomes]
rs7674600	0.81[ASN][1000 genomes]
rs7677996	0.81[ASN][1000 genomes]
rs7679418	0.81[ASN][1000 genomes]
rs7680156	0.81[ASN][1000 genomes]
rs7687336	0.81[ASN][1000 genomes]
rs7687725	0.81[ASN][1000 genomes]
rs7692377	0.81[ASN][1000 genomes]
rs7693166	0.90[ASN][1000 genomes]
rs7698430	0.81[ASN][1000 genomes]
rs9715099	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv829962	chr4:69786869-69910283	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv2757064	chr4:69863174-69901607	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv980213	chr4:69870183-69893292	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69868800-69882000	Weak transcription	HepG2	liver
2	chr4:69879400-69880200	Weak transcription	Liver	Liver

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