Variant report

Variant	rs2292728
Chromosome Location	chr15:33602363-33602364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:33601555-33604941	PBDE	blood:	n/a	n/a
2	RAD21	chr15:33601716-33602414	SK-N-SH	brain:	n/a	chr15:33602025-33602044 chr15:33601857-33601876

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FMN1-4	chr15:33602351-33602447	ENSG00000259446.1

Variant related genes	Relation type
RYR3	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11852558	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs3817326	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7180341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33601600-33604200	Active TSS	Aorta	Aorta
2	chr15:33601800-33602400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33601800-33602400	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr15:33601800-33604200	Active TSS	Brain Cingulate Gyrus	brain
5	chr15:33601800-33604400	Active TSS	Brain Substantia Nigra	brain
6	chr15:33602000-33602400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:33602000-33602400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr15:33602000-33602600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
9	chr15:33602000-33604400	Active TSS	Colon Smooth Muscle	Colon
10	chr15:33602000-33604600	Active TSS	Brain Angular Gyrus	brain
11	chr15:33602200-33602400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:33602200-33602400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:33602200-33602600	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr15:33602200-33602800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:33602200-33602800	Active TSS	Colonic Mucosa	Colon
16	chr15:33602200-33603000	Active TSS	Brain Hippocampus Middle	brain
17	chr15:33602200-33603400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
18	chr15:33602200-33603600	Bivalent/Poised TSS	Fetal Stomach	stomach
19	chr15:33602200-33604200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:33602200-33604200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:33602200-33604200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
22	chr15:33602200-33604400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
23	chr15:33602200-33604400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
24	chr15:33602200-33604800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr15:33602200-33608000	Active TSS	Brain Anterior Caudate	brain

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