Variant report

Variant	rs2292731
Chromosome Location	chr11:102496405-102496406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11225344	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12786739	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099063	0.91[AMR][1000 genomes]
rs2280211	0.96[AMR][1000 genomes]
rs3781788	0.86[ASN][1000 genomes]
rs3889106	0.87[AMR][1000 genomes]
rs7115479	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7123742	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7126560	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102487000-102497000	Weak transcription	HSMMtube	muscle
2	chr11:102491600-102496800	Enhancers	HepG2	liver
3	chr11:102492200-102497200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:102493800-102501600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:102495800-102496600	Enhancers	Fetal Intestine Large	intestine
6	chr11:102496000-102496600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links