Variant report

Variant	rs229312
Chromosome Location	chr5:29507779-29507780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12517415	0.93[EUR][1000 genomes]
rs1354575	0.85[ASN][1000 genomes]
rs16899039	0.93[EUR][1000 genomes]
rs16899046	0.93[EUR][1000 genomes]
rs16899057	0.93[EUR][1000 genomes]
rs186653	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4867179	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4867181	0.93[EUR][1000 genomes]
rs56031236	0.93[EUR][1000 genomes]
rs607373	0.83[ASN][1000 genomes]
rs620508	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs626513	0.83[ASN][1000 genomes]
rs629225	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636354	0.82[ASN][1000 genomes]
rs640632	0.86[ASN][1000 genomes]
rs641437	0.95[ASN][1000 genomes]
rs642717	0.95[ASN][1000 genomes]
rs683004	0.98[ASN][1000 genomes]
rs689242	0.83[ASN][1000 genomes]
rs7705810	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs788579	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv880953	chr5:29315267-29579124	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1019711	chr5:29499039-29512100	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1017912	chr5:29499039-29516289	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv969938	chr5:29499999-29512428	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv597757	chr5:29500305-29510636	Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29507000-29516000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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