Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101984738..101985505-chr7:109219567..109220139,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNAJB9-5	chr7:109219694-109220109	NONHSAT122753

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499979	0.97[ASN][1000 genomes]
rs11521007	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12536153	0.97[ASN][1000 genomes]
rs12705619	0.97[ASN][1000 genomes]
rs13238416	0.97[ASN][1000 genomes]
rs13239845	0.96[ASN][1000 genomes]
rs1357685	0.90[ASN][1000 genomes]
rs1464744	0.97[ASN][1000 genomes]
rs1474355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474357	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524271	0.99[ASN][1000 genomes]
rs1524273	0.95[ASN][1000 genomes]
rs1616510	0.97[ASN][1000 genomes]
rs1721445	0.97[ASN][1000 genomes]
rs1721447	0.97[ASN][1000 genomes]
rs1721448	0.97[ASN][1000 genomes]
rs1721898	0.97[ASN][1000 genomes]
rs1721899	0.97[ASN][1000 genomes]
rs17463939	0.97[ASN][1000 genomes]
rs17464044	0.97[ASN][1000 genomes]
rs1880236	0.97[ASN][1000 genomes]
rs1880237	0.96[ASN][1000 genomes]
rs2140585	0.96[ASN][1000 genomes]
rs2140587	0.99[ASN][1000 genomes]
rs56165817	0.99[ASN][1000 genomes]
rs62473267	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109211800-109234000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:109212000-109219800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:109217400-109220400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:109218000-109223800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:109218200-109225000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:109218200-109226400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:109218800-109219800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:109219000-109221000	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:109219200-109221200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:109219400-109220200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:109219600-109221200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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