Variant report

Variant	rs2293816
Chromosome Location	chr14:80283378-80283379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12885142	1.00[ASN][1000 genomes]
rs1997565	1.00[ASN][1000 genomes]
rs1997567	1.00[ASN][1000 genomes]
rs2178886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2223032	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2223034	1.00[ASN][1000 genomes]
rs2293831	1.00[ASN][1000 genomes]
rs4243665	1.00[ASN][1000 genomes]
rs4903883	1.00[ASN][1000 genomes]
rs6574526	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs727105	1.00[ASN][1000 genomes]
rs727106	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8003909	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8010821	1.00[ASN][1000 genomes]
rs8016178	1.00[ASN][1000 genomes]
rs8016336	1.00[ASN][1000 genomes]
rs8017057	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs932261	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs932262	1.00[ASN][1000 genomes]
rs932263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs932264	1.00[ASN][1000 genomes]
rs959165	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80281000-80286600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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