Variant report

Variant	rs2293832
Chromosome Location	chr14:80304320-80304321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17764884	0.86[CHB][hapmap];0.87[CHD][hapmap];0.90[ASN][1000 genomes]
rs2049826	0.93[GIH][hapmap];0.87[MEX][hapmap]
rs2091925	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2091926	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2205219	0.84[AMR][1000 genomes]
rs2293833	0.90[ASN][1000 genomes]
rs2293834	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35224540	1.00[ASN][1000 genomes]
rs4522356	0.89[GIH][hapmap];0.87[MEX][hapmap]
rs7143634	0.95[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs760288	0.84[AMR][1000 genomes]
rs8004595	0.87[GIH][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2293832	FOS	cis	parietal	SCAN
rs2293832	GSTZ1	cis	cerebellum	SCAN
rs2293832	POMT2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80302600-80307600	Weak transcription	Brain Substantia Nigra	brain
2	chr14:80303200-80308000	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:80303200-80308400	Weak transcription	NH-A	brain
4	chr14:80303400-80306200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:80303400-80306400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:80303400-80308200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:80303400-80308400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:80303400-80308400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:80303400-80308400	Weak transcription	Osteobl	bone
10	chr14:80303800-80304800	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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