Variant report
| Variant | rs2294346 |
|---|---|
| Chromosome Location | chr6:25689487-25689488 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:25689262..25691319-chr6:25695765..25697664,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10946793 | 0.88[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs12215823 | 0.96[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs2205936 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3922681 | 0.80[ASN][1000 genomes] |
| rs3936052 | 0.89[EUR][1000 genomes] |
| rs4464786 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4513787 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4566883 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4612154 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4711093 | 0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs6456693 | 0.86[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs6901027 | 0.95[EUR][1000 genomes] |
| rs6912391 | 0.96[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs6922556 | 0.88[EUR][1000 genomes] |
| rs760698 | 0.87[ASN][1000 genomes] |
| rs9366626 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9366627 | 0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs9379778 | 0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs9379779 | 0.87[ASN][1000 genomes] |
| rs9461203 | 0.96[EUR][1000 genomes] |
| rs9467571 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883488 | chr6:25592489-25731691 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029920 | chr6:25638507-26585842 | Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 3 | nsv538162 | chr6:25638507-26585842 | Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1215 gene(s) | inside rSNPs | diseases |
| 4 | nsv427747 | chr6:25641380-25908218 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:25683000-25689600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
