Variant report

Variant	rs2295317
Chromosome Location	chr14:24683543-24683544
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:122)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr14:24681937-24683555	HepG2	liver:	n/a	n/a
2	CTCF	chr14:24683400-24683550	MCF-7	breast:	n/a	chr14:24683424-24683442
3	NFIC	chr14:24682069-24683813	HepG2	liver:	n/a	n/a
4	MYBL2	chr14:24682030-24683968	HepG2	liver:	n/a	n/a
5	MAFK	chr14:24682202-24683599	K562	blood:	n/a	chr14:24683517-24683532
6	CTCF	chr14:24683420-24683570	HepG2	liver:	n/a	chr14:24683424-24683442
7	CREB1	chr14:24682082-24683911	HepG2	liver:	n/a	n/a
8	HCFC1	chr14:24682068-24683655	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr14:24683400-24683550	GM12865	blood:	n/a	chr14:24683424-24683442
10	MAFK	chr14:24683361-24683686	HepG2	liver:	n/a	chr14:24683517-24683532
11	MBD4	chr14:24682063-24683778	HepG2	liver:	n/a	n/a
12	POLR2A	chr14:24682019-24684053	H1-hESC	embryonic stem cell:	n/a	n/a
13	GATA1	chr14:24682203-24683544	PBDE	blood:	n/a	chr14:24683364-24683371 chr14:24683362-24683372 chr14:24683364-24683371 chr14:24683362-24683371 chr14:24683364-24683371 chr14:24683359-24683375
14	POLR2A	chr14:24682055-24683997	HepG2	liver:	n/a	n/a
15	POLR2A	chr14:24682051-24683550	GM12891	blood:	n/a	n/a
16	CTCF	chr14:24683520-24683670	GM06990	blood:	n/a	n/a
17	MAFK	chr14:24683437-24683685	HepG2	liver:	n/a	chr14:24683517-24683532
18	POLR2A	chr14:24681981-24683574	GM12878	blood:	n/a	n/a
19	CTCF	chr14:24683400-24683550	NHDF-neo	bronchial:	n/a	chr14:24683424-24683442
20	TEAD4	chr14:24681968-24683704	HepG2	liver:	n/a	n/a
21	POLR2A	chr14:24683436-24683583	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr14:24681154-24686357	HepG2	liver:	n/a	n/a
23	CTCF	chr14:24683520-24683670	A549	lung:	n/a	n/a
24	CTCF	chr14:24683480-24683630	GM12867	blood:	n/a	n/a
25	CTCF	chr14:24683440-24683590	GM12874	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:24683542-24683592	CMK	blood:	n/a
2	chr14:24683528-24683578	HL-60	blood:	n/a
3	chr14:24683542-24683592	Jurkat	blood:	n/a
4	chr14:24683542-24683592	HL-60	blood:	n/a
5	chr14:24683528-24683578	AG04450	lung:	fetal
6	chr14:24683542-24683592	GM19239	blood:	n/a
7	chr14:24683528-24683578	HCT-116	colon:	n/a
8	chr14:24683542-24683592	HCT-116	colon:	n/a
9	chr14:24683542-24683592	Caco-2	colon:	n/a
10	chr14:24683542-24683592	GM12892	blood:	n/a
11	chr14:24683542-24683592	K562	blood:	n/a
12	chr14:24683542-24683592	Hepatocyte	liver:	n/a
13	chr14:24683542-24683592	MCF10A-Er-Src	breast:	n/a
14	chr14:24683542-24683592	HMEC	breast:	n/a
15	chr14:24683542-24683592	HPAEpiC	pulmonary alveolar:	n/a
16	chr14:24683528-24683578	HCPEpiC	choroid plexus:	n/a
17	chr14:24683542-24683592	SK-N-SH_RA	brain:	n/a
18	chr14:24683528-24683578	HNPCEpiC	eye:	n/a
19	chr14:24683528-24683578	HPAEpiC	pulmonary alveolar:	n/a
20	chr14:24683528-24683578	Hela-S3	cervix:	n/a
21	chr14:24683528-24683578	HMEC	breast:	n/a
22	chr14:24683528-24683578	NB4	blood:	n/a
23	chr14:24683542-24683592	HRE	kidney:	n/a
24	chr14:24683542-24683592	HCM	heart:	n/a
25	chr14:24683542-24683592	HepG2	liver:	n/a
26	chr14:24683542-24683592	HCPEpiC	choroid plexus:	n/a
27	chr14:24683542-24683592	AG09309	skin:	n/a
28	chr14:24683542-24683592	SAEC	small airway:	n/a
29	chr14:24683528-24683578	CMK	blood:	n/a
30	chr14:24683542-24683592	SK-N-MC	brain:	n/a
31	chr14:24683542-24683592	PANC-1	pancreas:	n/a
32	chr14:24683542-24683592	Hela-S3	cervix:	n/a
33	chr14:24683528-24683578	Hepatocyte	liver:	n/a
34	chr14:24683528-24683578	HepG2	liver:	n/a
35	chr14:24683542-24683592	PFSK-1	brain:	n/a
36	chr14:24683542-24683592	ProgFib	skin:	n/a
37	chr14:24683528-24683578	SK-N-SH_RA	brain:	n/a
38	chr14:24683542-24683592	LNCaP	prostate:	n/a
39	chr14:24683528-24683578	HAEpiC	amniotic membrane:	n/a
40	chr14:24683542-24683592	HEK293	kidney:	embryo
41	chr14:24683528-24683578	AG04449	skin:	fetal
42	chr14:24683528-24683578	H1-hESC	embryonic stem cell:	embryo
43	chr14:24683542-24683592	H1-hESC	embryonic stem cell:	embryo
44	chr14:24683542-24683592	A549	lung:	n/a
45	chr14:24683528-24683578	HEEpiC	esophagus:	n/a
46	chr14:24683542-24683592	NT2-D1	testis:	n/a
47	chr14:24683542-24683592	AG10803	skin:	n/a
48	chr14:24683528-24683578	GM12878	blood:	n/a
49	chr14:24683528-24683578	PANC-1	pancreas:	n/a
50	chr14:24683528-24683578	ovcar-3	ovarian:	n/a

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24614698..24618732-chr14:24681293..24686635,9	MCF-7	breast:
2	chr14:24681838..24686459-chr14:24698203..24703209,7	K562	blood:
3	chr14:24681489..24683896-chr22:29136971..29139325,2	MCF-7	breast:
4	chr14:24657069..24662255-chr14:24679017..24683823,7	K562	blood:
5	chr14:24657069..24659757-chr14:24681163..24683823,2	K562	blood:
6	chr14:24562256..24566141-chr14:24679709..24684040,4	MCF-7	breast:
7	chr14:24627288..24629695-chr14:24682917..24684693,2	K562	blood:
8	chr14:24680927..24686311-chr14:24766466..24771455,6	K562	blood:
9	chr14:24682923..24685133-chr14:24776691..24778395,2	MCF-7	breast:
10	chr14:24682906..24687740-chr14:24707883..24712855,6	K562	blood:
11	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
12	chr14:24582139..24585680-chr14:24681172..24684966,4	K562	blood:
13	chr14:24682382..24684800-chr14:24800505..24802328,2	K562	blood:
14	chr14:24680938..24683854-chr14:24736234..24738459,2	K562	blood:
15	chr14:24681602..24685045-chr14:24898549..24902277,4	MCF-7	breast:
16	chr14:24608866..24610755-chr14:24681114..24684449,4	MCF-7	breast:
17	chr14:24680755..24686632-chr14:24737203..24743863,8	MCF-7	breast:
18	chr14:24562071..24566026-chr14:24681194..24683838,4	K562	blood:
19	chr14:24682270..24687913-chr14:24764870..24771791,12	MCF-7	breast:
20	chr14:24682724..24684618-chr16:2203699..2206163,2	MCF-7	breast:
21	chr14:24608723..24612009-chr14:24681529..24684015,3	K562	blood:
22	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
23	chr14:24627382..24636644-chr14:24680297..24686914,11	MCF-7	breast:
24	chr14:24682802..24685207-chr14:24711355..24714494,4	K562	blood:
25	chr14:24663072..24666624-chr14:24679241..24683731,7	K562	blood:
26	chr14:24581643..24583639-chr14:24682241..24684966,3	K562	blood:
27	chr14:24647373..24649581-chr14:24682421..24684138,2	MCF-7	breast:
28	chr14:24618673..24621227-chr14:24682825..24685142,2	K562	blood:
29	chr14:24582823..24585383-chr14:24679580..24684086,4	MCF-7	breast:
30	chr14:24682332..24685366-chr14:24686250..24689239,4	K562	blood:
31	chr14:24683518..24685322-chr14:24738872..24741925,4	K562	blood:
32	chr14:24562071..24566278-chr14:24680757..24683932,6	K562	blood:
33	chr14:24681591..24684402-chr14:24776273..24778851,2	K562	blood:

No data

Variant related genes	Relation type
TM9SF1	TF binding region
ENSG00000254692	TF binding region
CHMP4A	TF binding region
ENSG00000254692	CpG island
TM9SF1	CpG island
CHMP4A	CpG island
ENSG00000100926	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000213928	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000259522	Chromatin interaction
ENSG00000259529	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000131653	Chromatin interaction
ENSG00000183765	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000100209	Chromatin interaction
ENSG00000199804	Chromatin interaction
ENSG00000260260	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100918	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000272658	Chromatin interaction

rs_ID	r²[population]
rs11553526	1.00[LWK][hapmap]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24681800-24683600	Active TSS	H1 Cell Line	embryonic stem cell
2	chr14:24682000-24683800	Active TSS	Brain Germinal Matrix	brain
3	chr14:24682600-24684600	Weak transcription	Aorta	Aorta
4	chr14:24682800-24683600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr14:24682800-24683600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:24682800-24683600	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr14:24682800-24683600	Flanking Active TSS	Hela-S3	cervix
8	chr14:24682800-24683800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr14:24682800-24683800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr14:24682800-24684200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:24682800-24684400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:24682800-24684600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:24682800-24684600	Enhancers	Placenta	Placenta
14	chr14:24682800-24684600	Weak transcription	Ovary	ovary
15	chr14:24682800-24684600	Enhancers	Stomach Mucosa	stomach
16	chr14:24683000-24683600	Enhancers	Primary B cells from peripheral blood	blood
17	chr14:24683000-24683600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:24683000-24683600	Weak transcription	Gastric	stomach
19	chr14:24683000-24683600	Flanking Active TSS	K562	blood
20	chr14:24683000-24684000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:24683000-24684000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:24683000-24684200	Flanking Active TSS	Dnd41	blood
23	chr14:24683000-24684400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr14:24683000-24684400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr14:24683000-24684400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr14:24683000-24684400	Enhancers	Brain Substantia Nigra	brain
27	chr14:24683000-24684400	Weak transcription	Lung	lung
28	chr14:24683000-24684600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr14:24683000-24684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:24683000-24684600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:24683000-24684600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:24683000-24684600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr14:24683000-24684600	Enhancers	Liver	Liver
34	chr14:24683000-24684600	Weak transcription	Esophagus	oesophagus
35	chr14:24683000-24684600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:24683200-24683600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:24683200-24683600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:24683200-24683600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:24683200-24683600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:24683200-24683600	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:24683200-24683600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:24683200-24683600	Genic enhancers	Fetal Kidney	kidney
43	chr14:24683200-24683600	Enhancers	Psoas Muscle	Psoas
44	chr14:24683200-24683600	Genic enhancers	HSMM	muscle
45	chr14:24683200-24683600	Genic enhancers	NH-A	brain
46	chr14:24683200-24683800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:24683200-24683800	Genic enhancers	Fetal Thymus	thymus
48	chr14:24683200-24684000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:24683200-24684000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:24683200-24684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links