Variant report

Variant	rs2295617
Chromosome Location	chr1:160722007-160722008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160720732..160722587-chr1:160809717..160812109,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLAMF7-4	chr1:160720213-160722038	NONHSAT007075

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12049314	1.00[CHB][hapmap]
rs7556485	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160714400-160726800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:160715200-160722800	Weak transcription	Colonic Mucosa	Colon
3	chr1:160717000-160724400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:160717600-160723400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:160718000-160723800	Genic enhancers	GM12878-XiMat	blood
6	chr1:160718400-160726000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:160718400-160731000	Weak transcription	Esophagus	oesophagus
8	chr1:160719000-160722400	Weak transcription	Ovary	ovary
9	chr1:160719200-160722200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:160719400-160731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:160720000-160723000	Enhancers	Fetal Thymus	thymus
12	chr1:160720200-160723000	Enhancers	Thymus	Thymus
13	chr1:160720600-160722200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:160720800-160722200	Enhancers	Dnd41	blood
15	chr1:160720800-160725800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:160720800-160731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:160721000-160724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr1:160721200-160725600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:160721400-160723000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:160721400-160725400	Weak transcription	Spleen	Spleen
21	chr1:160721600-160722400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:160721800-160722400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr1:160722000-160736400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links